Thiosulfativibrio zosterae: THMIRHAT_01870
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Entry
THMIRHAT_01870 CDS
T06856
Symbol
deaD-1
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tzo
Thiosulfativibrio zosterae
Pathway
tzo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tzo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
THMIRHAT_01870 (deaD-1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tzo03019
]
THMIRHAT_01870 (deaD-1)
03009 Ribosome biogenesis [BR:
tzo03009
]
THMIRHAT_01870 (deaD-1)
Enzymes [BR:
tzo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
THMIRHAT_01870 (deaD-1)
Messenger RNA biogenesis [BR:
tzo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
THMIRHAT_01870 (deaD-1)
Ribosome biogenesis [BR:
tzo03009
]
Prokaryotic type
rRNA helicases
THMIRHAT_01870 (deaD-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
CMS1
AAA_30
AAA_19
Cas3-like_C_2
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
BBP42441
UniProt:
A0A6F8PK10
LinkDB
All DBs
Position
complement(247236..249005)
Genome browser
AA seq
589 aa
AA seq
DB search
MNTEIKFSDLGLSDAILKTLEEIGYETPSPIQEKAIPVLLKGGDVLGMAQTGTGKTAAFA
LPILSKIDINQQDPQVLVLAPTRELAIQVAEAFQTFSRNIKGLHVLPIYGGSEYSTQIRA
LKRGVHVVVGTPGRVMDHITKGTLKLDQLKAMVLDEADEMLRMGFIDDVEWILKHTPKTR
QIALFSATMPKEVHRIANTYLQNPTEVIIKQATATATTIDQKYWLVSGLHKLDALTRILE
AETFDGIIVFVRTKTATVELAEKLEARGYAAAALNGDIAQNQRERIVDHLKSGKLDILIA
TDVVARGLDVERISHVINYDIPYDNESYVHRIGRTGRAGRSGTAILFVAPRERRLLASIE
HSTKKKITQMTLPTAQEINDGRVVRFKDKIIDAAQSGDLDFYQKMVESIESESNIPAIEI
AAGLAKLLQGDVPFFLDEKAQSKAREYEDRGDRGGRGERNDRGSRGDRPDRAPRGDRPER
APREKRAQTPPNEGMERYRLEVGRTHGVKPGNIIGCIANEAGIDGEFIQKLNIEDTFCTV
DLPATLSKEALGDLKRAWVCGQQLNVSKMQDGTSPAKKRFSLNKRKPKA
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgaatacagagatcaaattttcagatctaggtctgtctgacgccatattaaaaacactt
gaagaaatcggttacgaaaccccatctcctatccaagaaaaagccattcctgttttatta
aaaggtggcgatgtattgggtatggcgcaaacgggtaccggtaagaccgccgcttttgcc
ttaccgattttgtcaaagattgacatcaaccaacaagacccacaggtgttagtactagca
cctacccgtgaattggcgattcaggttgcagaagccttccaaactttttctcgtaatatc
aaaggcttgcatgtactaccgatttacggtggttcagaatacagcacccaaattcgtgcg
ctaaagcgtggcgttcacgtggtagttgggacacctggacgagtgatggaccacatcacc
aaaggcactctaaaattagaccagttgaaagcaatggtcttagatgaagccgacgaaatg
ctacgcatgggcttcattgatgatgttgagtggattttaaagcacacgcctaagacgcgt
cagattgccttgttctctgcgaccatgccaaaagaagtgcaccgcattgccaacacttat
ttgcaaaacccaactgaagttatcatcaaacaagccacggccacggcgaccaccattgac
caaaaatattggttagtgagcggcttacacaagttagatgctttaacccgtattttagaa
gccgaaacctttgatgggattattgtgttcgtgcgcaccaaaactgcgaccgttgaattg
gctgaaaaacttgaagcgcgtggttatgccgccgctgccttaaacggtgatattgcgcaa
aaccagcgcgagcgtattgttgaccatttaaaatctggcaagttagacatcttaatcgct
accgatgtggtagcgcgtggtttagatgttgagcgtatcagtcatgttattaactacgac
attccttatgacaacgaatcttatgtgcaccgtatcggtcgtactgggcgtgcgggtcgt
agcggaacggctatcttgtttgtcgcacctcgtgaaagacgcttattggcttctatcgag
cattcaaccaagaaaaaaattacccaaatgactttgccgaccgcacaagaaatcaacgat
ggtcgtgtcgtgcgctttaaagacaaaatcatcgatgctgcgcaaagtggcgatttagat
ttctaccaaaaaatggttgaatcgattgaatctgaaagcaacattcctgcgattgaaatt
gcggctggtttggctaaattattacaaggtgacgtgcctttcttcttagatgaaaaagcc
caaagcaaagcgcgcgaatatgaagaccgcggagatcgtggcggacgcggtgagcgcaat
gaccgtggttctcgtggtgatcgcccagacagagcgcctcgcggcgaccgtcctgaaaga
gcacctcgcgaaaaacgcgcacaaacgccacccaacgaaggcatggagcgttaccgttta
gaagtgggccgcacccatggtgttaagccaggcaatatcatcggctgtatcgctaacgaa
gcgggtattgatggtgagttcattcaaaagctcaacattgaagatactttctgtacggtg
gatttgccagcaaccctgtctaaagaagcgcttggcgacttaaagcgtgcctgggtttgt
ggacaacaactgaatgtatctaaaatgcaagatgggacttcacccgctaaaaagcgtttt
tctttgaataaaagaaagccaaaagcttaa
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