Thiosulfativibrio zosterae: THMIRHAT_02290
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Entry
THMIRHAT_02290 CDS
T06856
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
tzo
Thiosulfativibrio zosterae
Pathway
tzo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tzo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
THMIRHAT_02290 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tzo03019
]
THMIRHAT_02290 (rhlE)
Enzymes [BR:
tzo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
THMIRHAT_02290 (rhlE)
Messenger RNA biogenesis [BR:
tzo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
THMIRHAT_02290 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
HI1480
CMS1
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BBP42483
UniProt:
A0A6F8PK52
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All DBs
Position
297620..298996
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AA seq
458 aa
AA seq
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MTFNDLGLSPNILSAVTAEGYTIPTPIQAQAIPAVLGGKDIMAAAQTGTGKTAGFTLPML
ELLMKGAGAKNNQARALVLTPTRELAAQVADSVQTYGKDLPLKSTVVFGGVKINPQMMRL
RGGVDILVATPGRLLDLYQQNAVKFDHLEILVLDEADRMLDMGFIHDIKKIMALLPKQRQ
TLLFSATFSPEIRQLAKGIVNNPVEISVTPENSTAETVSQKVYPVDKKQKTPLLIKLIGE
HNWFQVLVFTKTKHGANKLTTELEKAGISAAAIHGNKSQNARTKALADFKANKIQVLVAT
DIAARGIDIDQLPHVVNFELPNVSEDYVHRIGRTGRAGASGEALSLVCADEFDFLKDIER
LTKQVIPRTLVPGFEPTHPLPESVLDLRPFKAPRPKKPKAPRTEHHDGQRSGENARGHQP
RSTRAGGAGGAGGAKPQGGNPQNRNRRPNPNRSGNKPA
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgacatttaacgacctaggtctttcccccaatattctcagcgccgtcaccgctgaaggt
tatacgattccaactccaatccaagcccaggcaatcccagccgttttaggtggcaaagat
attatggccgccgcacaaactggaaccggcaaaaccgctggatttaccttgccaatgtta
gagttgttaatgaaaggtgctggcgctaaaaataatcaagcacgcgccttggtactcacc
ccaacccgtgaactggccgctcaggtggcagacagtgtgcaaacttatggcaaagattta
ccgttaaaatcaacggtggtatttggtggcgtaaaaatcaatccgcaaatgatgcgcttg
cgtggtggtgtggatattttggtcgcaacgccgggtcgtctattagatctttatcaacaa
aatgccgtgaagtttgaccatcttgaaattttggtgctggatgaagccgaccgtatgtta
gacatgggctttattcacgacattaaaaaaatcatggcgctcttaccgaagcaacgccaa
accctattgttttcagcgaccttctcgccagaaattcgtcagttagccaaaggtatcgtg
aataatccggttgaaatttcggtgacgccagaaaacagtaccgccgaaacggttagccaa
aaagtgtatccagtggataaaaaacaaaaaacacccttgttgattaaattgattggcgag
cacaattggtttcaagtgttggtatttaccaaaaccaaacatggtgccaataaactcacc
accgaactggaaaaagccggcatttcagcagccgccattcacggtaataaaagccaaaac
gctcgtaccaaagcgcttgcggattttaaagccaacaagattcaagtgttggtggccacc
gacatcgccgcgcgcggcatcgacatagaccaactgccgcatgtggtcaattttgaactg
cccaatgtgtcagaagactatgttcatcgtatcggcagaacaggtcgtgccggtgccagt
ggtgaagccttatcattggtatgtgctgatgagtttgatttcttaaaagacatagagcgt
cttaccaaacaagtcattccccgtacactggttcctggatttgagcccacgcatccattg
ccagagtcggtgttagatttgcgtccgtttaaagcaccgcgccctaaaaagccaaaagcg
cctagaacagaacaccatgatggacaacgctccggcgaaaatgcccgtggtcaccaacct
cgttcaacccgtgcgggtggggctggtggtgcaggtggcgcaaaaccacaaggcggtaat
cctcaaaatcgtaaccgtcgcccaaacccgaatcgttcaggtaacaaacccgcttaa
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