Thiosulfativibrio zosterae: THMIRHAT_09400
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Entry
THMIRHAT_09400 CDS
T06856
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
tzo
Thiosulfativibrio zosterae
Brite
KEGG Orthology (KO) [BR:
tzo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tzo03016
]
THMIRHAT_09400 (rnd)
Enzymes [BR:
tzo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
THMIRHAT_09400 (rnd)
Transfer RNA biogenesis [BR:
tzo03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
THMIRHAT_09400 (rnd)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
AFUB_07903_YDR124W_hel
Motif
Other DBs
NCBI-ProteinID:
BBP43194
UniProt:
A0A6F8PMC2
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All DBs
Position
complement(1077862..1079004)
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AA seq
380 aa
AA seq
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MTNIITNTDALAPFCAHLQTCKWMAIDTEFMRVDTYYPELCLIQVQSSAGQLALIDPLAF
NQMQDLKVFWDCLSNPNLIKVFHSARQDIEVLYQVSQQMPVAIFDTQIAGVFLNYGNLAG
LAKMVEAELGILLEKDQTRTHWERRPLSDKQIAYAADDVKYLAPLYEKIVQQLSQEQLAV
LQADFQDLLNPIHYDNPPVEAGHKLKGTKGLNAKQLAICFRLAEWREHFAITRNKPKRWV
LSDECIVDIAKRPPITVEALYKVPNIKSSSIKSYGAEWIAIIDDVFQHPETWPAKVSHPA
PPSSEEAKLIDLAQALLTQIAHDINCPPNNLANKADLLAMVRSSSAVLKGWRHFVFEQPF
KKLLLGEVSLKIQNQQLTLE
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
atgacaaacatcatcaccaataccgatgccctagcgccattttgtgcgcacttacagact
tgtaaatggatggcaattgacaccgaatttatgcgggtggacacctattaccctgaactc
tgtttaattcaagtgcaaagcagtgcgggacaactggcgttgattgaccccttagccttt
aaccaaatgcaagacctgaaggttttttgggactgtttaagcaatccaaatctcatcaaa
gttttccattctgcccgtcaagatatcgaagtattgtatcaagttagccagcaaatgcct
gttgcaatttttgacacccaaattgcaggcgttttcttaaattatggcaatctagccggt
ttggcaaaaatggtcgaagccgaattaggcatccttctcgaaaaagaccaaacccgtacc
cattgggaacgccgtccactcagcgacaaacaaatcgcctatgccgcagatgatgtgaaa
tatttagcgcccttgtatgaaaaaatcgtgcaacaactcagccaagaacagcttgcggtt
ttacaagccgattttcaagacctactcaaccctattcattatgacaatcccccagtcgaa
gccggacacaagcttaaaggcacgaaaggcttaaatgccaaacaactggccatttgtttt
cgtctagcggagtggcgtgagcattttgccatcacacgcaataagcccaagcgttgggtt
ttgtcagacgaatgtattgtggatattgccaaacgccctcccattactgttgaagcactt
tataaagtgcccaatattaagtcgtcatctatcaaaagctatggcgcagaatggattgcc
attattgatgatgtttttcagcaccctgaaacttggccagcaaaagtcagccatccagcg
ccaccctcttccgaggaagccaagctgattgatttagcccaagcgttgctcacccaaatt
gcccacgatatcaattgcccccccaataatctagccaataaagcggatttactcgcaatg
gtgcgatcttcaagtgctgttttaaaaggttggcgacattttgtctttgaacagcctttt
aaaaagttacttttgggcgaagtgtcattaaaaattcaaaaccagcaactgacattagag
tag
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