Thiosulfativibrio zosterae: THMIRHAT_10110
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Entry
THMIRHAT_10110 CDS
T06856
Symbol
sbcC
Name
(GenBank) nuclease SbcCD subunit C
KO
K03546
DNA repair protein SbcC/Rad50
Organism
tzo
Thiosulfativibrio zosterae
Brite
KEGG Orthology (KO) [BR:
tzo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tzo03400
]
THMIRHAT_10110 (sbcC)
DNA repair and recombination proteins [BR:
tzo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
THMIRHAT_10110 (sbcC)
Archaeal homologous recombinant proteins
THMIRHAT_10110 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SMC_N
SbcC_Walker_B
AAA_29
Laminin_II
AAA_21
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
BBP43265
UniProt:
A0A6F8PME6
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All DBs
Position
1148170..1151223
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AA seq
1017 aa
AA seq
DB search
MKALALTIQAFGPFADTQTIDFNAFGDSSLYLINGNTGSGKTTLLDAISFALYGDTTGKE
RDATEMRCDYANASLLTQVTFEFKLGSKTYRIQRIPKQDAPKARGEGMTSKGPEAYLWEI
HGDASTTLLASKKVTEVTQKVIELLGLNSEQFRQVMVLPQGRFRELLLADSKDREEIFSQ
LFQTQIYKQVEDKIKEQAKEVSDQIKAFETKIAGILETVELSSSDAVDTEITTLAVEHQI
KLQQKNDLGQAHLKAIKQHQAGLNCQQQFDNLTAQQERLSIHLKEQPNIDQLKAAMKRAL
SAQKISPMFEQMELLTQDKLKLENTLQDLRVSNQQAIQVLATAEQSAKTANDNAKTIEQL
NRELDKLQSYQDALQKLQLAHADMQTAHQAAQHQQANLTQAQVSIQTLKAAQHSAEQSLE
GLQALVTQETDARLKQAQLQEQLKMVAELARLESLLSHKKQEGEQANQQVQIALQALNAA
EQTATECQMRWHLGQANILAKTLKNNQACPVCGSLEHPQPAQWQDASHEIEQSHVDAAFA
QVAACQKKHAEASNHLTALRTQYSELKSQRDQLKHALTTDASVEALNQSLADIQNQIQHI
ESAKTEQNNTQANLGNIKQQLSALEANLQVLQTEVYHLQTQAQLKHQAWSDLQTQLPEAY
RNLEALNSAINNLQQRLAELKQAQETARLALEAARSRADKAQQSLESSQQQLKDLAQKQA
ASQQQWQMALEASDFKDVTEFKSALWSAQALEQHQKTINTYEEQLNQINGAIQQLQTSLA
DQAAPDLNRLQQQVDEVKVLLDNAELEFKAIDQRVTLLKSVQQKLALAHQENQTLQDEYH
LIGTLSQVLSGAAGDKVNLQRFVLSLLLADVLEIASLRLKMMSNGRYELIRKEDKSKGNK
TSGLDLEILDTWNDSSRGVATLSGGESFMAALSLALGLSDVVQSYSGGIKLDTLFIDEGF
GSLDQESLDRSIEMLKQLQASGRSIGIISHVSELKEQMAMRIDVHASGQGSFLKVVV
NT seq
3054 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcactcgccttaaccatccaagcctttggcccctttgccgatacccaaaccatc
gactttaatgcgtttggcgacagttcactgtacctgattaatggcaatacgggatcgggt
aaaaccactcttttggacgccatcagttttgccctgtatggcgataccaccggtaaagaa
agagatgccaccgagatgcgctgcgattatgccaatgcgtccttactcacgcaagtcacc
tttgaatttaaactcgggtcaaaaacctatcgcattcaacgcatccccaagcaagatgcg
cccaaagccagaggcgaggggatgacttctaaaggcccagaagcctatttatgggaaatc
catggggatgcttcaaccactttgctggcctctaaaaaagtcaccgaagttacccaaaag
gtgattgaactgctcggtcttaacagcgaacaatttagacaagtgatggtgttaccccaa
gggcgctttagagaactgttattagccgattctaaagatcgagaggagatttttagccag
ttatttcaaacccaaatctacaaacaagtcgaagacaaaattaaagaacaagccaaagaa
gtcagtgaccaaatcaaggcttttgaaaccaagattgccggtattttagaaaccgtagag
ttaagctcaagcgatgccgtagacacagaaataacaacccttgcagttgaacatcaaatc
aagcttcagcaaaaaaacgacctgggtcaagcacatctaaaagccatcaaacaacatcaa
gcagggcttaattgtcagcaacagtttgacaacttaaccgctcagcaagaaaggttaagc
atccacctcaaagaacaacccaacatagatcaattaaaagcggccatgaagcgtgcgctc
tcggcacaaaaaatcagtcctatgtttgagcagatggaattactcacccaagacaaactt
aaactggaaaatactcttcaagatttaagggtgtctaatcaacaagccattcaagtccta
gcaacggcagaacagtcggccaaaaccgccaatgacaatgccaaaaccattgagcagctt
aatcgagaactagacaagctgcaaagctatcaagacgcgcttcaaaaattacaactcgcc
cacgcagacatgcaaactgcgcatcaagcggcacagcatcagcaagccaacctaactcaa
gcacaagtgtccatacaaacgcttaaagccgcacaacactcagccgagcagagtttagaa
ggcttgcaagcccttgtcactcaagaaacagatgcaagattaaagcaagctcaactgcaa
gaacagctgaaaatggtcgcggagcttgccagacttgaatcgctactgagccataaaaaa
caagaaggcgagcaagccaatcaacaagtgcaaatcgctttgcaagcactcaatgctgcc
gaacaaactgcaacagaatgtcaaatgcgctggcacctagggcaagccaatattctggca
aaaaccctcaaaaacaaccaggcctgccccgtctgtggcagtttagagcatcctcagccc
gctcaatggcaagatgccagtcatgaaatagagcaatcccatgtagatgccgcatttgcc
caagtggcggcttgtcagaaaaaacacgctgaagccagtaatcacttaaccgctcttaga
acccaatactcagaattaaaatctcagcgcgatcaactcaaacacgctttaacaaccgat
gcctctgttgaagccttaaatcagtccttggctgacattcaaaaccagatacaacacatt
gagtccgccaagacggaacagaataatactcaagccaatcttggcaatatcaaacaacaa
ctttcagccctagaagctaatctgcaagttttacaaaccgaagtttatcatttacaaacg
caagcccagttaaaacaccaggcctggtcagatttacaaacccagctcccagaagcctac
cgcaatttagaggcattaaactcggctattaacaatttgcaacagcgtttagccgagtta
aagcaagctcaagaaaccgcaagactggcattagaagcggcaagaagtcgagccgataaa
gcacagcagtcgcttgaaagcagccaacaacagcttaaagacttagcgcaaaaacaagca
gctagtcagcaacaatggcaaatggcactcgaggcgagcgacttcaaagatgtaacggaa
tttaagtcggcactatggtcagcgcaagcgttagagcagcatcaaaaaaccatcaacacc
tatgaagaacagctcaaccaaatcaacggtgcgattcaacaacttcaaactagcctagca
gatcaagcagcgcccgacttaaatcgcttacaacaacaagtggatgaggttaaagttttg
ctggataacgcagaacttgagtttaaagcgattgatcaaagagtcacgctgctgaaatcc
gttcaacaaaaactcgcccttgctcatcaagaaaaccaaactctgcaagatgaatatcac
ttgataggcactctaagccaagtgctctcgggtgctgcgggggataaggttaatctacaa
aggtttgtgttgagcttgttgttagctgatgtgttagagattgcctcgttacgcttaaaa
atgatgagcaatggtcgttatgagctgattcgcaaagaagataaaagcaaaggcaataaa
acatccggcctagatttagaaattttagacacctggaatgacagcagccggggcgttgca
accctctcgggtggcgaatcctttatggcggcattgtctttagccttaggcttgtctgat
gttgtgcagtcttattcgggtggcatcaaactcgataccctgtttattgatgagggcttt
ggcagtttagaccaagagtcactggatcgctccattgaaatgcttaaacagcttcaagcc
agtgggcgcagtattggcataatttctcatgtgtctgagttgaaagaacaaatggcaatg
aggattgatgtgcatgccagcgggcagggcagttttttaaaggtagtggtttaa
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