Thiosulfativibrio zosterae: THMIRHAT_12070
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Entry
THMIRHAT_12070 CDS
T06856
Name
(GenBank) hypothetical protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
tzo
Thiosulfativibrio zosterae
Pathway
tzo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tzo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
THMIRHAT_12070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tzo03019
]
THMIRHAT_12070
Messenger RNA biogenesis [BR:
tzo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
THMIRHAT_12070
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RMMBL
Lactamase_B_2
Lactamase_B
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
BBP43461
UniProt:
A0A6F8PMW9
LinkDB
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Position
complement(1342477..1343739)
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AA seq
420 aa
AA seq
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MIYGHAGQYLMVDCGMGFLSLPNEITQTQRVVPDISPLLSQKNRLQGIVITHGHEDHLGA
LVHVWPQLQVPIYASAFSAALIERKFAQAELDISRFLYTIATLNPVTVGFFEVQWLPVTH
SIVQSHSLQISTALGTVLHTADWKMDANPLLEAPFSFKPFGHIKNLVALIGDSTNALKPG
KTPSESACFADLLETVQQQPYRVVVSCFSSNLARLITLARVAKASGRYFAVMGRAMEQML
SLAKAHGYWPADLQALSPYELGYLPRHEVMLITTGSQGEPNSGLWRLARNNSRFMGLEAE
DCIIFSANKIPDNLVRIQNLIQAFKLQGITVIHAEEYKDKHLHVSGHPSQQDIVELYQHL
KPPLVIPVHGEAIHLQAHAQLIKEHQLAQTVLLGENGDLFQIIPSGKVIKNRVEVGLISI
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgatttatggtcatgcagggcaatacttgatggtggattgtggcatgggctttttatcc
ctgccaaatgaaataactcaaacccaacgcgttgtgccagacattagccctttattaagc
caaaaaaatcgcttacaaggcatagtgattacccatggccatgaagaccacttaggcgct
ttggttcatgtatggccacaacttcaagtccctatctacgccagtgcctttagcgctgcc
ttgattgagcgtaagtttgctcaggcggagttggacatcagtcgatttctttataccatt
gcgaccctaaacccagttacggttgggttttttgaagtgcaatggttaccggtaactcat
tcaattgttcaatctcatagtcttcagatttccacggctttggggactgttttgcacaca
gccgactggaaaatggatgccaatccccttttagaagccccttttagttttaaaccgttt
ggtcacatcaaaaacttggttgctctgattggtgactcgaccaacgccttaaagcctggt
aaaacgccttcagaaagtgcctgctttgctgatctgttggaaaccgttcaacaacaaccc
taccgagttgtggtcagttgctttagcagtaatctagcgcgcttaatcactttggctagg
gttgctaaggcatcaggacgatattttgcagtgatggggcgtgcgatggagcaaatgctc
agtcttgccaaggctcatgggtactggcctgccgacctgcaagcactatcgccttatgaa
ctgggttatttaccccgccatgaagtcatgcttatcacgactggctcgcaaggagaaccc
aactcaggtttatggcgtttagctcgaaataactctagatttatggggcttgaagcggag
gattgcattatattcagtgctaacaaaattccagacaaccttgtgcgtattcaaaacttg
atacaggcctttaaattgcaaggcatcacggtcattcacgccgaagaatacaaagataag
catcttcatgtatcaggccatccaagccaacaggacatcgtagaattgtatcaacacctc
aaaccacccttggtcataccggtacatggcgaagccattcacttacaagcccacgcacag
ttaattaaagaacaccaactggcgcaaactgtattgctaggcgaaaacggcgacttgttt
caaatcattccatcaggcaaggtgattaaaaatcgggttgaagtgggtctaatcagtatt
tga
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