Thiosulfativibrio zosterae: THMIRHAT_14470
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Entry
THMIRHAT_14470 CDS
T06856
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
tzo
Thiosulfativibrio zosterae
Brite
KEGG Orthology (KO) [BR:
tzo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tzo03019
]
THMIRHAT_14470 (hrpA)
Enzymes [BR:
tzo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
THMIRHAT_14470 (hrpA)
Messenger RNA biogenesis [BR:
tzo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
THMIRHAT_14470 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_19
HA2_N
AAA_22
ResIII
nSTAND3
SRP54
NACHT
AAA_16
ABC_tran
T2SSE
TsaE
AAA_30
Motif
Other DBs
NCBI-ProteinID:
BBP43701
UniProt:
A0A6F8PNK2
LinkDB
All DBs
Position
complement(1603281..1607282)
Genome browser
AA seq
1333 aa
AA seq
DB search
MNPDHSIKNVIENSDLDKQNLYKSIKQCLVKDRFYFSKQLKALQLSDRKLGELASKNDQA
WLNLAQKIAHSKAQVALKRQAVPKPIVFDANLPVAARKDELLALIQQHQVVVLAGETGSG
KTTQIPKICLEAGRGIFGRIACTQPRRLAARSVAERIAEELGSTLGNLVGYQVRFHDQVH
EQSLIKVMTDGILLAEIQNDKFLNQYDTIIIDEAHERSINIDFLLGILKQLLPKRPDLKL
IITSATIDTQRFSQHFDNAPIVEISGRTYPVEVRYRPLSQFEDDEGNVFEQDIATGIAHA
LDELALEDPFGDVLVFQIGERDIKETAEVLKKHKLPNTEIIPLYARLSLAEQNKVFQLSQ
KRRVILSTNVAETSLTVPGIKFVIDPGLNRISRYSVRSKVQRLPIEKISQASANQRKGRC
GRVSSGVCIRLYDEADFNARPEFTEPEIHRTSLASVILQMTQLKLGDVHNFPFIEPPEDK
AVNDGFRQLHEIGALDEHRQLTETGQQIARLPLDPRIAKMVMEAQANGVLAEVLLIAAAI
SIQDPRDINESNRQVAKQAHAKFEDSRSDFLFFLNLWRFYENQRRHLSQNKLRKLCKTNL
LNFMRMKEWHDLFVQLEMSLKQLGIKVPQCHLYEEVRQGNQVTERLADIHHFGVHRSLMA
GLLGNLAMRDDEIGYLGARNTKLFIHPSSALFKSKPKWILSAELVETTKLYARTNAAIDV
AWVERLAGHLIKKSYADPHWLKNKGQVSAYESVTLYGLPIVNRRPCNYGAINPVEARKIF
IQGALVQGEMDSKVAFFVHNQKLIAEVQSIEQKLRRLDYMIDDVALYHFYDACIPSHIYN
KPAFEKWAKKSLFKNADALQSCYLTQEFLLKQAVDESLLDSFPSQMALRNQLPLKIDYQF
DPGKQQDGVVFHIPLNALNVAQASEFEWLTPGFLKEKIANLIKLLPKQLRKQFIPAPQYA
DLVLPELSKEFTDKKGGLLAQLVWSLNRRAQHRVTEADFAVADLPSHLKPYFILEDEGGR
KLAEGADLQVLKDDYLHLVERKIHQHHQKRQAEKVIEQWDFGDLPAQQTLKNQGLEMVAY
PALQVKKDQVILGLVSDAAFAKQLHGEGVLQLLRLALADKEKYLQKKLPLQKACLCFATY
GTCQDLTQQVIDRALTHLVPTPESIRTQAVYLETLETVRLAWINHAQQIAKQVEALLLQH
QKIAQRLRGKVNPRWLGSLADLQGQLDGLISKEFVRTTPQTWFEQMPRYLQGIEKRLEKM
DIDPTKDLAALEQLSPLLKTYQLILAENNPQNQPGLVEIRWALEELRLSLFAQPMKTLKP
VSIARIEKMLKSL
NT seq
4002 nt
NT seq
+upstream
nt +downstream
nt
ttgaatcctgaccacagtattaaaaatgtcatagaaaatagtgacttagataaacaaaac
ttatacaaatccattaagcaatgtttggtcaaggatcgtttttatttttcaaaacagctc
aaagctttacaactttctgatcgtaaattaggggaattggcttctaaaaatgaccaggcc
tggttaaatttagcgcaaaaaatcgcccattccaaggcgcaagtggctttaaaacgacaa
gccgttcctaaacccatcgtgtttgatgccaatcttcctgtggcagcgcgaaaagatgaa
ctgctggcgctgattcaacaacatcaagtagtggtcttagccggtgaaacgggttctggt
aaaaccacgcaaatccctaaaatttgtttagaagctgggcgtggcatttttggtcgcatt
gcctgcacccaaccacgacgcttagcggctcgcagtgtggcagagcgcatagccgaagag
ttgggttctaccctgggtaaccttgtgggttatcaagtgcgttttcatgatcaggtgcat
gagcaaagtttgattaaggtgatgacggacgggattttgctggccgaaatccaaaatgat
aaatttctcaatcaatacgacaccattattattgatgaagcccatgaacgcagtatcaat
attgattttttattgggcatcttaaagcagctattacctaagcgccctgacctaaaactg
attattacctcggcgacgattgatacccagcgtttttctcaacactttgataatgcaccg
attgttgaaatttcggggcgtacctatcctgttgaagtgcgttatcgacctttgagtcag
tttgaagatgatgaaggcaatgtttttgagcaggacattgcaacaggcattgcgcatgcc
ttggatgaattggcattagaagacccttttggcgatgtgctggtttttcaaattggtgag
cgagacattaaagaaaccgccgaagtacttaaaaaacacaaattgcccaacaccgaaatc
attccgctttatgcacgattgagtttggcagagcaaaacaaagtgtttcaactgtcgcaa
aaacgccgcgtaattttatccaccaatgtcgccgaaacctctctcaccgtgccaggcatt
aagttcgtcatagacccaggtttgaatcgcatcagccgttattcggtgcgctctaaagtg
caacgcttgccaattgaaaaaatatcacaagcttctgctaaccagcgcaaaggccgctgt
ggtcgtgtcagctctggggtgtgtattcggttatatgatgaagctgattttaatgcccgc
ccagagtttaccgagcccgaaattcaccgcacctctttagcgtcggttattttgcaaatg
acccaacttaagctgggtgatgtgcacaattttccatttattgagccaccagaagacaag
gcggtgaatgatggctttcgccaacttcatgaaattggcgcattagacgagcatcgccag
ctgaccgaaacagggcagcaaattgcgcgtttgccgcttgatcctcgtatcgccaaaatg
gtcatggaagctcaagcgaatggtgtactcgctgaagtattattgattgccgccgcaatc
agtattcaagaccccagagatattaacgaaagtaatcgtcaagttgcgaaacaggcgcat
gccaaatttgaagacagccgctcggactttttgtttttcttaaatctgtggcgcttttac
gaaaatcagcgtcgccatttatcgcaaaacaaactgcgcaaactgtgcaaaaccaatcta
ctcaactttatgcgcatgaaagaatggcacgatttgtttgtccagttggaaatgagttta
aaacaactcggtatcaaagtgcctcaatgtcatctttatgaagaagttcgccaaggcaat
caggtcaccgaacgcttggcagacatacatcattttggtgtgcatcgctcattaatggca
ggtttgttaggtaatttggcaatgcgggatgatgaaatcggttacctgggcgcgcgcaat
accaaattgtttattcatcccagttcagcgctttttaaaagtaaacccaaatggatattg
tctgccgaattggttgaaaccaccaagctctatgcgcgcactaatgccgccattgatgtg
gcctgggttgagcgtttggcagggcatttgattaaaaaatcctatgccgatccgcattgg
ttaaagaataaaggccaggtcagtgcctatgagtcagtcacgctttatggtttgccaatt
gttaatcgacgcccgtgcaattatggcgccattaaccctgttgaagcgcgtaaaatcttt
attcaaggggcgttggtgcaaggtgaaatggattctaaggtcgctttttttgtgcataac
caaaagctgattgcagaggtgcaatccatcgaacaaaagctgcgccgtttggactatatg
attgacgatgtggcactttatcatttttatgatgcctgtattcccagtcacatttataac
aaacctgcctttgaaaagtgggctaaaaagtccctttttaaaaatgcagatgccttgcaa
agttgttatttaacccaagaatttttgctcaaacaagccgttgacgaaagtttgctagac
agctttccatcacaaatggcgctgcgtaatcagctgccgcttaaaattgattatcaattt
gaccctggaaaacaacaagatggtgtggtgtttcacattccattaaatgcgctcaatgtt
gcacaggcttctgagtttgaatggttaacccctgggtttttaaaagagaaaattgcaaat
ttaatcaaattgttacccaaacaacttcgaaagcaatttatccctgcgccgcagtatgcc
gatttggttttgcctgaactttcaaaagaattcaccgataaaaagggtggattattagcg
cagttggtgtggagtttaaatcgtcgtgcacaacatcgcgtcaccgaagcggattttgcc
gtggccgatttaccgtcacacttaaaaccctattttatcttggaagatgaagggggtaga
aagttagcagaaggtgcggatttgcaggttttaaaagatgactatttacatctcgttgag
cgcaaaattcatcaacaccatcaaaaacgccaagctgaaaaagtgattgagcaatgggac
tttggcgatttacccgcccaacaaacccttaaaaatcagggcttagaaatggtggcctat
cctgcgttacaagtaaaaaaagaccaggtgattttgggcttggtcagtgatgctgctttt
gccaaacagttgcatggcgaaggggttttgcagttgttgcgtttggcattggccgataaa
gaaaagtatctacaaaagaaactgcccttgcaaaaagcctgcttgtgttttgccacctat
ggcacttgccaagatttaacccaacaggtgattgaccgtgcgttaacacacttggtgcca
acgcccgagtctatcagaacccaagctgtctatcttgaaaccctagaaacggtgcgtttg
gcgtggattaatcatgcgcaacagattgctaaacaggtggaagccttattattacaacat
caaaaaattgcgcaacgcttaaggggtaaggtaaacccaagatggttgggttctttggca
gatttgcaggggcaattagacggcttaatctctaaagagtttgtgcgaacgacgccgcaa
acttggttcgagcaaatgccgcgctatttgcaaggcattgaaaaacgcttagaaaaaatg
gatatcgatccgactaaagatttagcggctttagaacaattaagtccgttattaaaaacc
tatcaactcattttggcggaaaataatccccaaaatcaaccaggcctggttgaaattcgc
tgggctttggaagagttaagattgtctttatttgcgcaacccatgaaaaccctaaagcca
gtgtcgattgctcgcattgaaaaaatgttaaaaagtttgtaa
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