Ursus arctos (brown bear): 113243737
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Entry
113243737 CDS
T05909
Symbol
SKIC2
Name
(RefSeq) SKI2 subunit of superkiller complex protein
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
uah
Ursus arctos (brown bear)
Pathway
uah03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
uah00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113243737 (SKIC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
uah03019
]
113243737 (SKIC2)
Enzymes [BR:
uah01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113243737 (SKIC2)
Messenger RNA biogenesis [BR:
uah03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
113243737 (SKIC2)
mRNA degradation factors
3'-5' decay
Ski complex
113243737 (SKIC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
HAS-barrel
DUF3516
Motif
Other DBs
NCBI-GeneID:
113243737
NCBI-ProteinID:
XP_026338320
LinkDB
All DBs
Position
Unknown
AA seq
1246 aa
AA seq
DB search
MMETERLVLPPPDPLDLPLRPVELGCTGRWELLNVPGAPESTLPHGLPPCAPDLRQEAEH
LFLSSPAWLPLHGVEHSARKWQRKMDPWSLLATQGAPVPSDLQAQRHPTTGQILGYKEVL
LENTNLSATTSLSLRRPPGPISQSLWGNPTQYPFWPGGMDEPTITDLSTREEAEEEIDFE
QDLLTVPPGFKKGVDFAPKDHPAPAPGLLSLSRLLEPLDLGGGDEDESEAVRQPGIPRGD
TVSASPCSASLARASSLEDLVLKEASTAVSPPEPPKPLPQEQWAIPVDVTSPVGDFYRLI
PQPAFQWAFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTS
PIKALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWV
IFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVIST
VARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGYYAAVEAKKERMSKHAQTFGAKQ
PTHQGGPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEI
HLFLQRCLARLRGSDRQLPQVLHMSELLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLF
ATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCK
GRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLLRVDALRVEDMMKRSFSEFPSRKDSK
AHEQALAELTKRLGALEEPDTTGQLVDLPEYYSWGEELTETRSLIQRRIMESVNGLKSLS
AGRVVVVKNQEYHNTLGVILQVSSNSTSRIFTTLVLCDKPTSEDPQERAPATPDVPYPDD
LVGFKLFLPEGPCDHTVAKLQPGDVAAITTKVLRVNGEKILEDFSKRQQPKFKKDPPIAA
VTTAVQELLRLAQAHPAGPPTLDPVNDLQLKDVSVVEGGLRARKLEELIWGAQCVHSPRF
SAQYLKLQERMQIQKEMERLRFLLSDQSLLLLPEYHQRVEVLRTLGYVDEAGTVKLAGRV
ACAMSSHELLLTELMFDNALSALRPEEIAALLSGLVCQSPGDPGEQLPSTLKQGVERVRA
VAKRIGEVQVACGLNQTVEEFVGELNFGLVEVVYEWARGMPFSELAGLSGTPEGLVVRCI
QRLAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLYTQ
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atgatggagaccgagcgactcgtgctacctcctccagaccccctggatctgccccttcgg
ccggtggagctgggatgcactgggcgctgggagctgctgaatgtgcctggggctccagag
agcacccttccccacggcctccctccctgtgccccagatctgcggcaggaagcagaacac
ttgtttttgtcatctccagcctggttgcctctgcatggtgtggaacactctgcccgaaaa
tggcagaggaaaatggatccctggtctctcctggccacacagggggccccagtgccctcc
gaccttcaggcccaaagacacccaaccacaggccagattctgggctacaaagaggtcctg
ctagagaatacaaacctgtcggccaccacctccttgtctcttcgccggcccccagggccc
atctcccagtccctgtgggggaatccaacacagtaccctttctggccaggtggaatggat
gagcccaccataacagatctgagtactcgggaggaggctgaggaggagatagactttgag
caagatcttcttactgttccacctggcttcaagaaaggtgtggactttgcaccaaaggat
cacccagctccagctcccggcttgctcagcctcagccgtttgctggaacctctggatttg
ggtgggggagatgaggatgagagtgaggcagtgcgacagccaggaattcccagaggggac
actgtttccgcctccccctgcagtgcttccctggcccgagcaagcagcttggaggaccta
gtgttgaaggaagcatccacagctgtatctcctccagagccccccaaacccctgcctcag
gagcagtgggcgattcctgtggatgtcacctcccctgttggtgatttctaccgcctcatt
ccccagccggccttccagtgggcatttgagccggatgtgttccagaagcaggccatcctg
catttggagcggcatgactctgtttttgttgcggctcacacatctgcagggaagacggtt
gtggctgaatacgccattgctcttgcccagaaacacatgacgcgcaccatttacacgtcg
cccatcaaggccctcagcaaccagaagttccgagactttcgaaacacattcggggatgtg
ggattgctcactggggatgtacagctgcacccagaggcctcctgtctcattatgacaaca
gagatccttcgctccatgctctacagtggctcagatgtcatccgggacctggagtgggtc
atctttgatgaagttcactacatcaatgatgctgagcgtggggttgtgtgggaggaagtg
ctcatcatgctgcctgaccacgtgtccatcatccttctgagtgctactgtccccaacgcc
ctcgagttcgccgactggatcgggcgactgaaacgtcgccagatctatgtgatcagcacc
gttgcacgccccgttcccctggagcattatctcttcacggggaacagccccaagacccag
ggggagctctttctgttgctggactcccgaggcgccttccacacaaaggggtactatgca
gctgtggaggccaagaaggagcggatgagcaaacacgcccagacctttggggccaaacag
cccacgcatcagggggggcctgcacaggaccgcggtgtgtacctatccctcctggcctcc
ctccgcacccgtgcgcagctgcccgtggtggtgttcactttctcccggggtcgctgtgat
gagcaagcctcgggcctcacctcccttgatctcaccacaagttcagaaaagagtgagatt
cacctcttcctgcagcgctgccttgctcgcctccgtggctctgaccgccagctgccccag
gtcctgcacatgtccgagcttctgcaccgtggcctgggagtgcaccacagtggcatcctg
cctattcttaaagagatcgtggagatgctcttcagtagaggcctggttaaggtcttgttt
gccacagagacctttgccatgggtgtaaatatgcctgcccgaacggtggtgtttgactcc
atgcggaagcacgatggctccaccttccgggatctgctccctggagagtacgtgcagatg
gcaggccgggcaggccggaggggcctggaccccacaggcaccgtcatcctgctctgcaag
ggccgtgtgcctgagatggcagacctgcaccgtatgatgatggggaagccgtcacagctg
cagtcccagttccgactcacgtacaccatgatcctgaacctgctgcgggtggacgccctc
agggtggaggacatgatgaagaggagcttctccgagtttccatcccgcaaggacagcaag
gcccatgaacaggctctagctgaactgaccaagagactgggggccttggaggaacctgac
acaactggccaactggttgacctgcctgagtattacagctggggggaggaactgacagag
acccggagcctgatccagcgacgcatcatggagtctgtgaatgggctcaagtctctctca
gcaggaagggtagtggttgtgaagaatcaggagtatcacaacacactgggtgtgatcttg
caggtctcctcgaactccacaagcaggatatttacaaccctggtcttgtgtgataagcct
acgtctgaggacccacaggagagggcaccagccaccccagatgtgccctaccccgatgat
cttgtgggattcaaactgttcctgcctgaagggccctgtgaccacacagtggccaagctc
cagccaggagatgtggccgccatcaccaccaaggtgctccgggtgaatggggagaagatc
ttagaggacttcagcaagaggcagcaaccaaaattcaagaaggatcctcccattgcagcc
gtgaccactgctgtgcaggaacttctgcgtttggctcaggcccacccagcgggtccccct
acccttgaccctgtcaatgacctgcagctcaaggatgtgtcagtggtggagggggggctc
cgggcccggaagctggaggagctgatctggggggctcagtgtgtgcacagcccccgtttc
tctgcccagtacctgaagctgcaggagcgaatgcagatacagaaggagatggagcgacta
cgcttcctgctgtcagatcagtcactgctgctgcttccggagtatcaccagcgagtagag
gtgctccgaaccctgggttatgtagatgaagcgggcactgtgaagctggcggggcgggtg
gcttgtgccatgagcagccatgaactactcctcactgagctcatgtttgacaacgctctg
agtgccctgcggccagaggagattgcggccctgctctccggcctggtctgccagagccct
ggggaccctggagagcagctcccaagcactctcaaacagggagtggaacgtgtccgggct
gtggccaagcggattggtgaggtccaggtggcctgtggcctgaaccagacagtggaggaa
tttgtgggggagctgaattttgggctcgtcgaggttgtgtacgagtgggcccggggcatg
cccttctccgagctggcggggctgtcggggacccctgagggcctggtggtccgctgcatc
cagcgcctggccgagatgtgtcgctcactgaggggggcagctcgtctcgtaggcgagcct
gtgctaggtgccaagatggagacggcggctaccctgctacggagggacatcgtctttgct
gccagcctgtacactcagtga
DBGET
integrated database retrieval system
