KEGG   Ursus arctos horribilis (North American brown bear): 113253497
Entry
113253497         CDS       T05909                                 
Symbol
VPS4B
Name
(RefSeq) vacuolar protein sorting-associated protein 4B
  KO
K12196  vacuolar protein-sorting-associated protein 4
Organism
uah  Ursus arctos horribilis (North American brown bear)
Pathway
uah03250  Viral life cycle - HIV-1
uah04144  Endocytosis
uah04217  Necroptosis
Brite
KEGG Orthology (KO) [BR:uah00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    113253497 (VPS4B)
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    113253497 (VPS4B)
  09143 Cell growth and death
   04217 Necroptosis
    113253497 (VPS4B)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:uah04131]
    113253497 (VPS4B)
   03400 DNA repair and recombination proteins [BR:uah03400]
    113253497 (VPS4B)
Membrane trafficking [BR:uah04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-III complex
    113253497 (VPS4B)
DNA repair and recombination proteins [BR:uah03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    113253497 (VPS4B)
SSDB
Motif
Pfam: AAA Vps4_C MIT AAA_lid_3 AAA_16 TIP49 AAA_14 RuvB_N AAA_5 AAA_22 IstB_IS21 AAA_25 AAA_18 DUF815 AAA_2 AAA_33 nSTAND3 AAA_17 RNA_helicase PhoH AAA_24 AAA_7 Mg_chelatase AAA_28 ResIII NACHT Parvo_NS1 bpMoxR TPR_1 KAP_NTPase DUF5906 MCM TPR_10
Other DBs
NCBI-GeneID: 113253497
NCBI-ProteinID: XP_026352230
LinkDB
Position
Unknown
AA seq 444 aa
MTSTSSNLQKAIDLAGKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRA
KCTEYLDRAEKLKEYLKKKEKNPQKPVKEGQPSPADEKGNDSDGEGESDDPEKKKLQNQL
QGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGK
SYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLC
GSRSENESEAARRIKTEFLVQMQGVGIDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPL
PEAHARAAMFKLHLGTTQNSLTETDFRELGKKTDGYSGADISIIVRDALMQPVRKVQSAT
HFKKVRGPSRADPNKVVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVCMSDMLRSLSN
TKPTVNEHDLLKLKKFTEDFGQEG
NT seq 1335 nt   +upstreamnt  +downstreamnt
atgacatccacctcgtctaacctccagaaagcaatagatcttgcaggcaaagcagcccag
gaagacaaagctgggaactatgaggaagctcttcaactctaccaacacgctgttcagtat
tttcttcatgtagttaaatatgaagctcaaggtgataaagccaagcaaagtattagggca
aagtgtacagaatatcttgatagagcggaaaaactaaaggagtacctgaaaaagaaagag
aaaaatccacagaagccagtgaaagagggacagccgagtccagctgatgagaaagggaat
gacagtgatggggaaggagaatctgatgatcctgaaaaaaagaaactacagaatcaactt
caaggtgccattgttatagagcgaccaaatgtgaaatggagcgatgttgctggtctagaa
ggagccaaagaggcacttaaagaggctgtgatattgcctattaaattccctcatcttttt
acaggcaagagaacaccttggaggggaattctgttatttgggccacctggaacaggaaag
tcttatttagccaaagctgtagcaacagaagcaaacaactcaacatttttttcaatatct
tcctctgaccttgtctctaagtggctaggtgaaagtgaaaagctagttaagaacttattc
caacttgccagagagaataaaccttccattatcttcattgatgaaattgattctctgtgt
ggctcaagaagtgaaaatgaaagtgaagccgcccgtcgaattaagacggagttcctagtt
caaatgcaaggcgttggtatagacaatgacggaattttggttctgggagccacaaatata
ccctgggttctggattctgccattagaagaagatttgagaaacgaatttatattcctttg
cctgaggcccatgcccgagcagcaatgtttaaactgcacttgggcaccacacagaacagt
ctcacagaaacagacttccgagaactcgggaagaagacggacggttattcgggggcagac
ataagtatcattgtgcgcgatgcgcttatgcagcctgttagaaaagtgcagtcagctact
cattttaaaaaggtgcgcggaccttcacgagctgatcccaacaaagtagtagatgatctg
ctaacaccctgttctcctggtgaccctggtgccattgaaatgacatggatggatgtccct
ggggataaacttttggagccagttgtttgcatgtcggatatgttacggtcactatctaac
acaaagcccacagtcaatgaacatgacttgttgaaattaaagaagtttacggaagatttt
ggccaagaaggttaa

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