Ursus arctos (brown bear): 113255328
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Entry
113255328 CDS
T05909
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
uah
Ursus arctos (brown bear)
Pathway
uah03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
uah00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113255328 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
uah03019
]
113255328 (MTREX)
03041 Spliceosome [BR:
uah03041
]
113255328 (MTREX)
03009 Ribosome biogenesis [BR:
uah03009
]
113255328 (MTREX)
03016 Transfer RNA biogenesis [BR:
uah03016
]
113255328 (MTREX)
Enzymes [BR:
uah01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113255328 (MTREX)
Messenger RNA biogenesis [BR:
uah03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
113255328 (MTREX)
Spliceosome [BR:
uah03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
113255328 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
113255328 (MTREX)
Ribosome biogenesis [BR:
uah03009
]
Eukaryotic type
Pre-60S particles
Helicases
113255328 (MTREX)
Transfer RNA biogenesis [BR:
uah03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
113255328 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
113255328
NCBI-ProteinID:
XP_026354741
LinkDB
All DBs
Position
Unknown
AA seq
1042 aa
AA seq
DB search
MADAFGDELFSVFEEDSTTAPGSKKDKEKEKGKWKGPPGSAEKGGKRFDGKLQSESTNIG
KAKRDADFEGTDEPIFGKKPRVEESVTEDLSLADLMPRVKVQSVETIEGCTHEVALPADE
DYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALR
EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS
EVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLH
KQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGD
QKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMV
EEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALF
ATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVD
EKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPG
VVEKVKNSEEQYNKIVIPNEESVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLV
KVKNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKP
DEKGEMQVVPVLVHLLSAISSVRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGVPLLDPI
DDMGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELK
KARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDL
SAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLS
SFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELE
NKFAEGITKIKRDIVFAASLYL
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgctttcggggatgaactcttcagcgtgttcgaggaagactcgaccaccgcg
cccggatctaaaaaagacaaggagaaagaaaaggggaaatggaaggggccgccggggtct
gcggaaaagggcgggaaacgttttgatggtaaattgcagtcagagtcaactaatattgga
aaagccaagagagatgcagattttgagggcacagatgaacccatttttggaaagaagcct
agggtggaagaatcagtaactgaagatttaagtctggcagacttgatgcccagagtcaag
gtacagtccgttgaaactattgaagggtgtacacatgaggttgcacttcctgcagatgaa
gattatttaccacttaaacctcgagttggaaaagctgcaaaggaatacccgttcattctt
gatgcttttcaaagagaagccattcaatgtgttgataataatcagtctgttttagtatct
gcacatacatcagcaggaaaaactgtatgcgctgagtatgccattgcattggctttaagg
gaaaaacagcgtgtaatatttaccagtccaattaaggctctgagtaaccagaaataccgg
gaaatgtatgaagaatttcaagatgttggtttgatgactggagatgttactattaatcct
acagcgtcttgtcttgttatgaccacagagattttgagaagcatgctgtacagaggttct
gaagttatgcgagaagtagcgtgggtcatatttgatgaaattcattacatgagagattca
gagcgtggtgttgtatgggaagaaactattattttgcttcctgacaatgtccactatgtg
tttctttcggctactattccaaatgcccgacagtttgctgaatggatttgccatttacat
aagcagccttgtcatgtaatttacacagattatcgacctactccgttgcaacattacata
tttccagcggggggagatggcctgcaccttgtggttgatgaaaatggtgacttcagagaa
gataattttaatactgcaatgcaagtacttcgagatgctggtgatttggcaaaaggagat
cagaaggggcggaaaggaggaacaaaaggaccatcaaatgtgttcaagattgtgaagatg
attatggaaagaaattttcaacctgtaattattttcagtttcagtaagaaggattgtgaa
gcctatgcacttcagatgacaaaattagattttaacacagatgaagaaaagaagatggtt
gaagaagtattcagtaatgccattgactgcttgtctgatgaagataaaaaactccctcag
gttgaacatgtacttcctcttttgaagcgagggattggtattcaccatggtggtttactt
cctattttgaaagaaactatagaaattctgttttctgaaggattgataaaggccttattt
gccacagagacttttgctatgggaattaatatgccagctagaactgttttatttacaaat
gcccggaaatttgatgggaaagatttccgatggatttcctctggtgaatacattcagatg
tctggtcgagctggaaggaggggaatggatgatagaggaattgtaattcttatggtggat
gaaaagatgagcccaacgattggaaaacagctacttaagggctcagccgatcctctaaat
agtgctttccatttgacctacaacatggttttgaacttactacgtgtagaagaaattaat
cctgagtacatgttggaaaaatccttttaccagtttcagcactatagagcaattccagga
gtagtagagaaggttaagaactcagaagaacagtataataaaatagtaataccaaatgag
gaaagtgtcgtcatctattataagattagacagcagcttgccaaactgggtaaagaaatt
gaagaatatattcataagccaaaatattgcctaccatttctacagccaggtcgtttggta
aaggtaaagaatgaaggagatgattttggctggggagtagtggtgaatttctcaaaaaag
tcaaatgttaagcctaattctggtgaactggatcctctatatgtagttgaagtgcttctg
cgctgtagcaaagaaagtttgaaaaattcagctaccgaggctgcaaaaccagctaaacct
gatgagaaaggagaaatgcaggttgttccagttttggtacacctcctgtctgccatcagc
agtgttaggctttacattcctaaagaccttcgaccagtggataacagacagagtgtttta
aaatcaatacaggaagttcagaaacgttttcctgatggtgttcctttattagaccctatt
gatgacatgggcattcaagatcaagggctgaaaaaagtcatccagaaagtggaggctttt
gagcatagaatgtattctcatccacttcacaatgatccaaatttggaaactgtgtataca
ctttgtgaaaaaaaagcacagattgcaatagatattaaatctgcaaagcgagaactaaag
aaagcaagaactgtcctacaaatggatgagctcaaatgtcgcaaacgtgttttaagaagg
ttgggattcgctacttcttctgatgtcatagagatgaaaggacgagtggcttgtgagata
agcagtgctgatgagctgcttctaactgagatgatgtttaatggccttttcaatgacctg
tctgcagaacaggcaacggcactactaagctgctttgtgtttcaagagaattctagtgag
atgcctaagttaacagagcagttagcaggaccacttcgtcaaatgcaggaatgcgctaaa
agaattgcaaaagtttcagcagaagccaaactggaaattgacgaagaaacatacctaagc
tcattcaaacctcacttaatggatgtagtgtatacctgggcaaccggagctacatttgcc
catatctgcaaaatgacagatgtctttgaaggcagcataattcgttgtatgcggcgactg
gaagaactgcttcgacagatgtgtcaagcagcaaaagccattggaaacactgagctggaa
aacaaatttgcagaaggaatcaccaaaatcaagagagatattgtgtttgctgccagcctc
tacttataa
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