Ursus arctos (brown bear): 113256024
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Entry
113256024 CDS
T05909
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
uah
Ursus arctos (brown bear)
Brite
KEGG Orthology (KO) [BR:
uah00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
uah03016
]
113256024 (RTCB)
Enzymes [BR:
uah01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
113256024 (RTCB)
Transfer RNA biogenesis [BR:
uah03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
113256024 (RTCB)
Prokaryotic type
tRNA splicing ligases
113256024 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
113256024
NCBI-ProteinID:
XP_026355516
LinkDB
All DBs
Position
Unknown
AA seq
505 aa
AA seq
DB search
MSRSYNDELQFLEKINKNCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMSAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgcagctataatgatgagctgcagttcttggaaaagatcaataaaaactgctgg
agaatcaagaagggcttcgtgcccaacatgcaggttgaaggagttttctacgtgaatgat
gctctggaaaaattaatgtttgaggaattaaggaatgcctgtcgagggggtggtgttggt
ggcttcctgccagccatgaagcaaattggcaatgtggcagccctgcctgggattgttcat
cgatctattgggcttcctgatgtccattcaggttatgggtttgctattgggaatatggcg
gcctttgatatgaatgaccccgaagcagtggtatccccaggtggcgtcggatttgacatc
aactgcggcgtgcgcttgctaagaaccaatttggacgaaagcgatgtccagcctgtgaag
gagcagcttgcccaagctatgtttgaccacattcctgtcggggtgggatcaaaaggtgtc
atccccatgagtgccaaagacttggaggaggccttggagatgggtgtggactggtccctg
agggaaggctatgcctgggctgaggacaaggagcactgtgaggagtacggaaggatgctg
caggctgaccccaacaaggtctccgcaagggctaagaaaagaggccttcctcagttggga
accctgggagcaggcaaccactatgcagaaatccaggttgtggatgagattttcaatgag
tacgcagctaagaaaatgggcatcgaccataagggacaggtgtgtgtgatgatccacagt
ggaagcagaggcttgggccaccaagtagccacagatgcactggtagctatggaaaaagcc
atgaagagagacaagattatagtcaatgaccggcagttggcttgtgctcggatcgcttcc
ccagagggtcaggactacctgaaggggatggcagcagctgggaactatgcctgggtcaac
cgctcctccatgaccttcttaacccgtcaggcttttgccaaggtcttcaacacaacccct
gatgacttggacctgcacgtgatctatgacgtttctcacaatattgccaaagtagagcag
cacgtggtggatgggaaggaacggacactgttggtacacaggaaggggtccacccgcgct
ttccctcctcaccaccccctcattgctgttgattaccaactcactggacagccggtgctc
attggcggcaccatgggcacctgtagttacgtgcttactggcaccgaacagggcatgact
gagacctttggaacaacttgtcatggagcgggccgtgcattgtcccgagcaaaatctcgt
cgtaatttagatttccaggatgtcttggacaaactggcagatatgggaatcgcaatccgt
gttgcctcacccaaactggttatggaagaggctcctgagtcctataagaacgtgacagat
gtggtgaacacctgccacgatgctggaatcagcaagaaggccattaaattgagaccgatt
gccgtgatcaaaggatag
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