Ursus arctos (brown bear): 113269383
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Entry
113269383 CDS
T05909
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X2
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
uah
Ursus arctos (brown bear)
Pathway
uah03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
uah00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113269383 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
uah03021
]
113269383 (PCF11)
03019 Messenger RNA biogenesis [BR:
uah03019
]
113269383 (PCF11)
Transcription machinery [BR:
uah03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
113269383 (PCF11)
Messenger RNA biogenesis [BR:
uah03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
113269383 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
SelA
Motif
Other DBs
NCBI-GeneID:
113269383
NCBI-ProteinID:
XP_026373995
LinkDB
All DBs
Position
Unknown
AA seq
1686 aa
AA seq
DB search
MSEQTPAEAGTAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA
QTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEEPSTPGTVV
SSPSISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSV
QQETSNLGSGSVPSKLHVPQIPPMAVKPPHQVPLQPEKSRPGPSLQIQDLKGTNRDPRLN
RMSQHSSHGKDQSHRKEFLMNTLNQSDTKTSKTVPSEKLNSSKQEKSKSGEKITKKELDQ
LDSKSKSKSKSPSPLKNKLSHTKDLKNQESESARVSEMSKRDPRLKKHLQDKTDSKDDDV
KEKRKTAEKKDKDEHMKSSEHRLVGSRNKIINGIVQKQDTITEESEKQGTKPGRSSTRKR
SRSRSPKSRSPIIHSPKRRDRRSPKRRQRSMSPTSTPKAGKIRQSGVKQSHMEEFTLPSR
EERNAKRSNKQDIRDPRRIKKTEEERPQEAANQHSTKSGTEPKENVENWQSSKSTKRWKS
GWEENKSLQQGDEHSKSPHLRHRESWSSTKGILSPRAPKQQHRLSVDANLQIPKELTLAS
KRELLQKTSERLASGEITQDEFLVVVHQIRQLFQYQEGKHRCNVRDSPTEENKGGLKKKP
LLSDAELTYYEHKAKLKRTQVQHSFPRLDLLDPDIFDYPLTDALLSGIECEPSKSKHASR
NSGAQFDRKEQFSERARRLSPISGSRTYAENLSPHEGRRRHDEQVSAKGVREEQRSPFND
RFPLKRPRYEDSDKPFVDSPASRFAGLDTNQRLTALAEDRPLFDGPSRPSVTRDGPTKMI
FEGPNKLSPRIDGPPTPGSLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVG
TPLRFEGPIGQAGGGGFRFEGSPGLRFEGSAGGLRFEGPGGQPVGGLRFEGHRGQPVGGL
RFEGPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPAGGIRFEGPLLQ
QGVGMRFEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFE
GPSVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTGQP
GPQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQSTRFDNHPSQRLESVSFN
QTGPYSDPPGNAFNAPSQGLQFQRHEQMFDSPQGPNFNGPHGPGNQSFSNPLNRASGHYF
DEKNLQSSQFGNFGNLPAPITVGNIQASQQVLTGVAQPVAFGQGQQFLPVHPQNPGAFVQ
NPSGALPKAYPDNHLSQVDVNELFSKLLKTGILKLSQPDSATTQVNEVAAQPPPEEEEDQ
TEDQDVPDLTNFTIEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQN
RTEKDVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEF
QSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFD
CTPSPSKTPVENPLNIMLNIVKNELQEPCESPKVKEERIDTPPACTEESIATPTEIKTEN
DTVESV
NT seq
5061 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagcagacgccggccgaggccggtactgcgggggcccgggaggacgcctgtcgg
gattatcagtcatcactcgaagacctgaccttcaatagcaaaccgcacatcaatatgctg
accattctagccgaggagaacctgcccttcgccaaggagatcgtctctctcatcgaggcc
caaaccgccaaggctccttcctcagagaagcttcctgttatgtaccttatggattctatc
gtgaaaaacgttggaagagagtatctcactgcctttactaaaaatctagttgcaacattt
atttgtgtgtttgaaaaggtggatgaaaatactagaaaaagtttatttaaattacgttcc
acatgggatgaaatattccctttgaagaaactttatgccctggatgtcagagtcaattcg
ttagatcctgcttggcctattaaacctctgccccccaatgtgaatacatctagcatccat
gtgaatcctaaatttttaaataaatcgcctgaagagccttcaacacctggcacagtggtc
agttcccctagcatctccactcctccaattgttcctgatatacaaaagaatcttacccaa
gaacaactaataaggcagcagttactggcaaaacaaaaacagttgttagaacttcagcag
aaaaagctggagcttgagctagagcaagctaaggcacaactggcagtttctcttagtgtt
cagcaggagacatccaacttaggttctggatctgtaccatccaaattacatgttccacaa
attccccctatggcagttaaacctccccatcaggttcctttgcaacctgagaaaagccgt
cctggtccatccttacaaattcaggatttgaaaggaactaatcgggatccccgtcttaat
aggatgagtcaacattcttcacatggaaaagatcagagtcacaggaaggaattcctaatg
aacacattgaaccaatctgatactaagacaagtaaaactgtaccctctgaaaaactaaac
tcatctaagcaagagaaaagtaaatcaggtgaaaaaataaccaagaaagaacttgaccaa
ttagattctaaatctaaatctaaatctaaatcaccatcacctctgaaaaacaaattatcc
cacacaaaagacttgaaaaatcaggaatctgaaagtgcaagggtgtctgaaatgagcaag
agagatccaaggttaaaaaaacatcttcaggataagactgatagcaaagatgatgatgta
aaagagaagagaaaaactgcagaaaaaaaggataaagatgagcacatgaaatcatctgaa
cacagactggttggaagtagaaataaaatcatcaatggcattgtacaaaagcaggataca
ataacggaagaatcagaaaaacaagggacaaaaccagggagatcaagtactagaaagcga
tcaagatcgagatcacccaagtctcggtcaccaattatacattctccgaagagaagagat
aggcggtcacccaaacgaaggcaaaggagtatgtctccaacttcgacgcccaaagctgga
aagattcggcaatcaggagttaagcagtcacatatggaagagtttacgctaccttccagg
gaagagcgaaatgctaagagaagtaataaacaggatattcgagatccaaggcgaataaaa
aagactgaggaggaaagaccacaagaagctgcaaatcagcattctacaaagtcgggcact
gaaccaaaggagaatgtagaaaattggcaaagttccaagtctaccaaaagatggaaatct
ggttgggaagaaaataaaagcttacaacagggtgatgaacatagtaaatctcctcatcta
aggcatagggagagctggtcaagcactaaaggaatcttgtcacctcgagccccaaagcag
cagcatcgattaagtgtagatgccaatcttcagattcctaaagagttaactcttgcaagc
aaaagagaattacttcaaaagacgagtgaacgtttagcatctggtgaaattacacaggat
gagttccttgttgttgtgcatcaaattcgacagctatttcagtatcaagaaggtaaacat
agatgcaatgtacgggatagtcctacagaagaaaataaaggtggattaaaaaagaaacct
ctcttatctgatgctgaattaacctactatgaacataaagcaaaactgaaaaggacacag
gttcagcattcatttccaagacttgatctcttagatcctgatatttttgactaccctttg
actgatgccttgttgtctggaatagaatgtgagccatccaaaagtaaacatgcaagtagg
aatagtggagcacagtttgacagaaaagaacaatttagtgaaagagcaagacgtctttct
cctatatctgggagtcgtacttatgctgagaatctttcaccccatgagggccggagaaga
catgacgagcaagtctctgctaaaggtgtacgagaagagcagagatcaccattcaatgat
cgttttccacttaagcgacctagatatgaagattcagataaaccatttgtagatagccca
gcatcaagatttgccggccttgatacaaatcagcgacttacagctttagctgaagataga
ccattatttgatggacctagtaggccatcagtaacaagagatggcccaaccaagatgatt
tttgaaggacctaataaattaagccctagaattgatggacctcctacaccaggttctctt
cggtttgatgggtcaccaggacaaatggggggaggtggccctttgagatttgaaggacca
caaggtcagctaggaggtgggtgtcctttgagatttgaaggtcctccaggaccagtaggg
acacctctgcggtttgaggggccgattggtcaagcaggaggaggtggttttcggtttgaa
ggttcccctggtctgaggtttgagggatctgcaggtggtttgcgatttgaaggtccaggg
ggccagcctgtgggtggtctcaggtttgagggacatcggggtcaacctgtgggtggtcta
aggtttgagggacctcatggtcagcctgtgggtggacttagatttgataatccccgaggt
caacctgttggtggacttagatttgaagggggtcatggtccatcaggggctgcaattagg
tttgatggacctcatggtcagccagcaggtgggatcagatttgagggccctttgctacag
cagggagttggaatgaggtttgagggcccccatggtcagtcagtagccggtttgaggttt
gaaggacaacataatcaacttggtgggaaccttaggtttgagggtccacatggtcagcca
ggggttgggatcaggtttgaaggaccgttagtccaacaaggaggtggaatgaggtttgag
ggtccttctgtgccaggaggtggcctgagaattgaagggcctctgggtcaaggtggtcca
aggtttgaaggttgtcatgctttaaggtttgatgggcagccaggtcagccatcactcttg
ccaagatttgatggattacatgggcagccaggtcctagatttgaaagaactggtcagcca
ggcccacagagatttgatggaccacctggacagcaggttcaaccaagatttgatggtgta
cctcaaagatttgatggtccacaacaccagcaagcatcaaggtttgatattcctcttggt
cttcaaagcacacgatttgacaatcatccttcacagaggcttgaatcagtgtctttcaat
cagactggtccatatagtgatccacctggcaatgcttttaatgccccatcccaaggacta
cagttccaaagacatgaacaaatgtttgattcacctcaaggaccaaattttaatggacca
catggccctggaaaccagagcttctccaatccccttaacagagcttctggacactatttt
gatgaaaagaatcttcagagttcccaatttggaaactttggcaatttacctgctccaata
acagtaggaaatattcaggcatctcaacaggttcttactggtgttgctcagccggtagca
tttggccaaggacaacagtttttgccggttcatccacaaaatcctggagcatttgttcag
aatccttcaggagctcttcctaaggcatatcctgataatcatctcagtcaggtggatgta
aatgaattattttcaaaactgctaaaaacaggaattctcaaattgtctcagcctgattca
gctacaactcaagtaaatgaagttgctgctcagcctccccctgaagaggaggaagatcaa
actgaagatcaggatgttccagatcttaccaattttacaattgaagaattgaaacaacgt
tatgatagtgttataaatcgactgtacactggtattcagtgttactcctgtggaatgagg
tttacaacatcacagacagatgtatacgcagatcacttggactggcattatcggcaaaat
agaactgaaaaagatgttagcagaaaagtcacgcatagacgttggtactacagtttaaca
gactggatagaatttgaggaaatagctgatttggaagaacgtgcaaagagccagtttttt
gaaaaggtgcatgaagaagttgtgctcaagactcaggaggctgctaaagaaaaggagttc
caaagtgtacctgctggaccggctggagcagttgagagttgtgaaatctgtcaagaacaa
tttgaacaatactgggatgaagaagaggaggaatggcatttgaaaaatgctattagagta
gatggaaagatttatcatccatcatgttacgaagattatcaaaatacatcttcatttgat
tgtacaccatctcccagcaagacaccggttgaaaaccctttgaacattatgttgaacatt
gtcaaaaacgaattgcaggaaccctgtgaaagtcccaaagttaaggaagaacgaattgat
accccaccagcttgtacagaggaaagcatagcaacacccactgaaattaaaacagaaaat
gatacagtcgagtcagtttaa
DBGET
integrated database retrieval system
