Candidatus Uabimicrobium amorphum: UABAM_00357
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Entry
UABAM_00357 CDS
T07685
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
uam
Candidatus Uabimicrobium amorphum
Pathway
uam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
uam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UABAM_00357
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
uam03019
]
UABAM_00357
03009 Ribosome biogenesis [BR:
uam03009
]
UABAM_00357
Enzymes [BR:
uam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
UABAM_00357
Messenger RNA biogenesis [BR:
uam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
UABAM_00357
Ribosome biogenesis [BR:
uam03009
]
Prokaryotic type
rRNA helicases
UABAM_00357
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DUF3834
CMS1
MUG113
DUF3450
T5orf172
Motif
Other DBs
NCBI-ProteinID:
BBM82014
UniProt:
A0A5S9II02
LinkDB
All DBs
Position
513644..515347
Genome browser
AA seq
567 aa
AA seq
DB search
MTTFSEFGLSSELLQAIEQIGFQTPTQIQQKAIPFLLENHRDFIGLAQTGTGKTAAFGLP
IIQKIHREKIPQALILSPTRELCLQIAKDLELFCKYKKNVAIVTVYGGAKIDPQINKIKK
GVQIVVATPGRMNDIIRRKKVDLTNIKTVVLDEADEMLNMGFKEELDAILQHTPTTKNIL
LFSATMPKQVIQIAETYIHDPYEVTVGKKNTGAETVDHAYYVVRGQDRYEALKRIADIHP
DIYGIIFCRTRAETKLIAEKLIKDGYNADALHGDLSQEQREFVMGKFRKKNLQMLVATDV
VARGLDVENLTHIISYNLPDDLETYTHRSGRTGRAGKKGVSIAIVSRREIEKIKRIERSI
HKQFERRQVPNGHEICERQFFHLIERVKNVEVNEEQIAPFMNKVYEKLEAFTPEEVIKHF
VALEFNMLLDYYKNERDLNVPYRSKDQNKNKQRSKNKEKHSTKFQRLFINVGRKNNVRPQ
DIISLVNDISGKRRIPIGEIDISKSFSFFEVPPHEAHELTSTTVYLDDKEVQIRKADSKE
SKDSGHRFKPNHTVGKKSKKQKRKRKK
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
gtgacaacgtttagtgaatttggactctcctctgaattattacaagccattgaacaaata
ggatttcagactccgacgcaaattcagcaaaaagcgataccatttcttttagaaaatcat
cgcgattttattggtttggcgcaaacaggtacgggaaaaacagccgcttttggattaccc
attattcaaaaaatacatcgtgaaaaaataccgcaagcattaattttgtcccctactcga
gaattgtgtttacagattgccaaagacttagagcttttttgtaaatacaaaaagaatgtg
gctattgtaacagtctatgggggagcaaaaattgatccacaaatcaacaagattaaaaaa
ggtgtgcaaattgttgtggcaacgcctgggcgtatgaatgatattattcgccgtaaaaaa
gtggatttaacaaatataaaaacagtggtacttgacgaagccgatgagatgctcaatatg
ggtttcaaagaagagctagatgccatactacaacatacaccgacaacgaaaaatatttta
ttattctccgctacaatgccgaagcaagtgattcagattgccgagacttatattcacgac
ccttacgaggttactgttggcaagaaaaatacaggtgctgagactgttgaccatgcttac
tatgtggtgcgtggacaagatcgttacgaggcattgaaaagaatcgcagatatacacccg
gatatctacggaattattttttgtcgtacacgagcagaaaccaaactgatcgctgaaaaa
ctgatcaaagatggctacaatgctgacgctctacatggcgatttatcgcaagaacaacgc
gaatttgtcatggggaaatttcgcaagaaaaatttgcaaatgctcgtggctactgatgtg
gttgcgcgtggacttgatgtggaaaatttaacgcatattattagttataatttgccagat
gacctagagacttacactcatcgtagtggacgtacagggcgtgccggtaaaaaaggtgtt
tctatcgccattgtatcgcgtagagaaatcgagaaaattaagcgcattgagcggagcatt
cacaaacagtttgaacgccgtcaagttcccaacggacacgagatttgcgaaaggcaattt
tttcatcttatcgagcgtgtaaaaaatgtagaggtaaacgaagagcaaatagcaccattt
atgaataaggtctacgaaaaattagaagcatttactcctgaagaagtgatcaaacatttt
gtggcgctagaatttaatatgttgctcgactactacaaaaacgagcgtgatctaaatgta
ccatatcgttcaaaagatcagaataaaaacaaacagcgttcgaaaaacaaagaaaagcat
agtacaaaatttcagcgtctgttcatcaatgtcggacgtaaaaacaatgtacgcccacaa
gacatcattagtttagtaaatgatatatcgggaaaaaggcgtattccgattggtgagata
gatattagcaaaagcttttcattttttgaagtgccaccacatgaagcccatgagttgact
tcgacaacagtctatttagatgacaaggaagttcaaatacgcaaggccgatagcaaagaa
agcaaagacagtggccacagattcaagccaaatcatacggtcggaaagaaaagtaaaaaa
caaaaacgcaaaagaaagaaataa
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