Candidatus Uabimicrobium amorphum: UABAM_03949
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Entry
UABAM_03949 CDS
T07685
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
uam
Candidatus Uabimicrobium amorphum
Pathway
uam03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
uam00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
UABAM_03949
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
uam03021
]
UABAM_03949
03400 DNA repair and recombination proteins [BR:
uam03400
]
UABAM_03949
Enzymes [BR:
uam01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
UABAM_03949
Transcription machinery [BR:
uam03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
UABAM_03949
DNA repair and recombination proteins [BR:
uam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
UABAM_03949
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
7TMR-HDED
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
BBM85575
UniProt:
A0A5S9IRX7
LinkDB
All DBs
Position
5372385..5376710
Genome browser
AA seq
1441 aa
AA seq
DB search
MVETFYDKINDYGSVTIKLASPEDIRSWSFGEVKKPETINYRTYRAEKDGLFCERIFGPE
RDWECYCGKYKGIKYKGIVCDRCGVKVAHSKVRRKRMGHINLASPVAHIWFFKAMPSRLS
TLLGIKNAHLERVIYFQDYIVIDPGETKLKKFDLLSEDKLRDTQAQYGDTFEVGMGAEAI
QKLLETLDLEALIEQLQKDYENTGAKQRQKEIIKRLELVKMIRESGNKSEWMILEVIPVI
PPDLRPLVLLDSGNFATSDLNDLYRRLINRNNRLKKLLEMNAPDVIIRNEKRMLQQSVDA
LFDNSRCRRPVVGTGNRPMKSLTDMIKGKQGRFRENLLGKRVDYSARSVIVVGPELKLHQ
CGLPKKIALELFQPFIIRKLKELGHADTIKSAKKMLERKDKEVWDILEDVIRDHPVLLNR
APTLHRVGIQAFEPILTEGNAIKIHPLVCSGFNADFDGDQMAVHLPLSIEAQVEASTLML
STNNIFSPANGEPIIAPSQDIVLGVYYYTIEKTYEVKKVPLMSSFQEVFLAYEHKKVDIH
SPVWVKLPEDQEIIPPPTEDEIRGHNIIKTTVGRVFFNRILPKGMPFYNHALHKKAITGV
ISECHNLLGRRPTLKLLDDLKQLGFHAATVGGISFAKNYLIIPEEKEEIINNARKKVEKI
EKNFKDGAITQKESHNSIVDCWTYARDQVGQVMMKCLEQNSGDEDIMFNPLYLMASSGAR
GSLEQIRQLAGMRGLMAKPSGAIIETPIIANFREGLKVLEYFSSTHGARKGLADTALKTA
DSGYLTRKLADVAQNVVINEIDCGTPDGVTKGAEKQGDKIIVPLNRNIRGRYARNTIKNK
QTGETIVRENEMITEEIAKKIEAMGYEKIRIRSPLTCKTPLGVCAKCYGMDLARGKRAEE
GLAVGIIAAQSIGEPGTQLTMRTFHIGGVAVKMRQEAEVTIPKRGDRVLFSFKNLQHVQN
RNKDYVVISRNASIVMHHEEIIKVPSGATLEIVDGQQVVLNTASQLIAKKGRTELKAKMG
GIVEIKDKKNVNENNKVTSRSGCKVVISFEEEVPIPLGAELHKLDGGKPIVFDGMVLETA
NLKKGEILANWDPHNIPIFSETNGVVHYDDIIPDVTMREDENGKVIIEHKGEKQPAIVLK
DKTGKNIAIYSVPEKAHIEVDDGEKVTAGTLLAKTPREVTGTQDITGGLPRVTEILEARR
PKNATVISEITGVVELGEKRRGKRTIIVKNTEGEKEISREHLVPHGKPLKVRRGDQVKAG
DALVDGPKVPHDILRCCGVAMLQQYLLQEIQKVYWAQNVKIDDKHIEIIIRQMMRKVRVE
KSGDTDFLPGAIVDKFQFHEVNRKMRESGKKMATYKPLLLGITKASLQSESFISAASFQE
TTKVLTEAALAGKKDELLGLKENVILGHMVPAGTGFKAHHQTDIEVVAEEETKEASESVT
S
NT seq
4326 nt
NT seq
+upstream
nt +downstream
nt
atggtagaaactttctacgataaaataaacgattatggttcagtaaccataaaactagca
tcaccagaggatattagaagttggtcttttggagaggtaaaaaaaccagaaacaataaac
tatcgtacgtatagagccgaaaaagatggcttgttttgtgaacggattttcggtccagaa
cgcgactgggaatgttattgcggaaaatataagggtataaagtacaagggaattgtgtgt
gatcgctgtggagtaaaagttgctcactccaaagtgcggcgtaagcgtatgggtcatata
aatcttgcttctcctgtggctcacatttggttttttaaagccatgcctagccgcctaagt
acacttttaggcattaaaaatgctcatctcgaaagagtgatttatttccaagactatatt
gtcatcgatcccggagagacaaagttaaagaagtttgaccttctttcggaagataaatta
cgcgacacccaggcgcaatacggtgatacattcgaagtagggatgggagcagaagctatc
cagaaactactcgaaacactagatttagaagctttgatcgagcagcttcaaaaagattac
gaaaatacaggtgcaaaacaacggcaaaaagaaattataaaaagactcgaactcgtaaaa
atgattcgcgaatcgggtaataaatcggaatggatgattctcgaagtaattccagtaatt
ccccccgatcttagacctctcgttctgttagattcaggaaactttgcgacaagtgacttg
aatgacttatatcgtcgtctcattaaccgcaacaatcgtttgaagaagttattagagatg
aatgcccctgacgtgatcattcgcaatgaaaagcgtatgttgcaacagtcagtagatgca
cttttcgacaactcacggtgtcgtcgaccagttgttggaacgggaaatcgaccgatgaag
agccttacagatatgattaagggtaaacagggacgtttccgtgaaaacttactaggtaag
cgtgttgactactccgcgcgttctgtgattgttgttggtccagaattaaaactacaccag
tgtggtttaccgaaaaaaatagccctagaactatttcagccctttattattcgaaaattg
aaagagctgggacatgctgataccatcaaaagtgctaagaagatgttggagagaaaagac
aaagaggtttgggatatactagaagatgtgattcgcgaccatccggtacttctcaaccgt
gcaccaacacttcaccgcgttggtatccaggcatttgagcctatattgacagaaggtaat
gccataaaaattcaccctctagtttgctcgggttttaacgcggactttgacggtgaccaa
atggcggtgcatttaccactttcgattgaagcgcaagtcgaagcaagcacgttgatgttg
tcaacaaataatattttctcgcccgcaaatggtgaaccgattattgcgccgagtcaggac
attgtattgggtgtttattactacacgattgaaaaaacttatgaagtaaagaaagtacct
ttgatgtcttcgttccaagaggtatttttggcatatgaacataagaaagtggatatccat
agccctgtgtgggtaaaacttcctgaagaccaggaaattatacctccaccaacagaagac
gaaatacgcgggcacaatatcataaaaacaaccgttggccgtgtgttcttcaaccgcata
ttgccaaaaggtatgcctttttacaatcatgctcttcacaaaaaagcgatcactggggtg
atttctgagtgccacaacctattagggcgaagaccaacgctgaagttattggatgacttg
aagcagttaggttttcacgctgcaaccgttggtggaatcagctttgcgaagaattatttg
attattcctgaggaaaaagaggaaattatcaataatgcgcgcaaaaaagtggagaaaatc
gagaagaacttcaaagacggtgcgatcacgcaaaaagagagccacaacagtattgttgac
tgttggacgtatgctcgtgaccaagtagggcaggtaatgatgaaatgcctcgaacaaaac
agtggtgacgaggacattatgtttaacccactatacttgatggcatcgagtggtgctcgt
ggtagtttagagcaaattcgtcagctcgctgggatgcgtggtttgatggcgaagccaagt
ggagcaattatcgaaacaccaattattgcgaacttccgcgaagggttgaaagtactggaa
tacttcagttcgacacacggtgcacgtaaaggtcttgctgataccgcgttgaaaacagcc
gactccggttatttgacacgtaaattggccgatgttgcgcaaaatgttgtgattaacgag
attgattgcggaacacctgacggtgtgaccaaaggagcggaaaagcaaggggataaaatt
atcgtacctctaaaccgcaacatccgcgggcgttatgcgcgtaataccattaaaaacaaa
caaacgggtgaaaccattgtacgcgaaaatgaaatgattaccgaagaaatcgcgaagaaa
atagaagcgatgggttatgaaaaaattcgtattcgcagtccattgacatgtaaaactcct
ttgggagtatgtgcgaagtgctacggtatggaccttgcacgtggtaagagagccgaagaa
ggtttggcggtagggatcatcgcagcacagtctattggggaacctggtactcagttaaca
atgcgtaccttccacattgggggggttgcggtaaaaatgcgtcaagaagccgaagtaacc
attccaaaacgtggggatcgcgttctttttagcttcaaaaatttacaacacgtacaaaac
cgcaacaaagactacgttgttatttcgcgtaatgccagtattgtgatgcatcacgaggaa
attatcaaagttccgtcaggagccactttggaaattgtcgacggacagcaagtggtttta
aatactgcttcgcagttgattgccaaaaaaggacgtacagaactcaaggcaaaaatgggt
gggattgttgagatcaaagacaagaaaaatgtcaatgagaacaacaaagtcaccagccgc
agtggttgcaaagtcgtgatttctttcgaagaggaagtacctattcctcttggtgcagaa
cttcacaaactcgatggtggtaaaccaattgttttcgacggtatggttttggaaactgcg
aatttgaaaaaaggtgagattcttgcaaattgggaccctcacaatattccaattttctcc
gaaacaaatggggtggtacactacgatgatattatccctgatgtgaccatgcgcgaagat
gaaaatggtaaggttatcattgagcacaagggtgaaaagcaacctgcgattgtcctaaaa
gacaaaacaggcaaaaatattgcgatttactctgtgcctgaaaaagcgcacattgaagta
gatgatggcgaaaaagtaactgcgggtactttgttggcgaaaacacctcgcgaggtaacg
ggtactcaggatattaccggtggtcttccacgtgtaacggaaattctcgaagcacgacgt
ccaaaaaacgcaacggttattagtgaaattactggtgtggttgagttgggcgaaaaacgc
cgtggtaagagaaccattattgtgaagaataccgaaggtgaaaaggaaatatcaagagag
cacctagttcctcacggtaaacctctaaaggtacgccgtggagatcaagtaaaagcagga
gatgctttagttgatggtccaaaggttcctcatgatattctacgttgttgtggagtggca
atgctacaacaatatttacttcaagagattcagaaagtttattgggcgcagaatgtaaag
atcgatgacaaacacattgagattatcattcgccaaatgatgagaaaagtacgtgtagaa
aaatcgggtgatacagattttctaccaggtgcgatcgtcgataaatttcaatttcatgaa
gtaaatcgcaaaatgcgcgaaagcggtaaaaaaatggcgacatataaaccactgcttttg
ggtattaccaaagcatcactacaatctgagtcgttcatcagtgcggcatcgttccaagaa
acaacaaaggttcttacggaagcggcccttgctggtaagaaagatgaactacttggcttg
aaagagaatgtgattttaggacacatggttcctgcaggaacaggttttaaagcacatcac
caaactgatattgaagttgtggccgaagaggaaacgaaagaagcctctgagtctgtgact
tcataa
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integrated database retrieval system
