Candidatus Uabimicrobium amorphum: UABAM_05778
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Entry
UABAM_05778 CDS
T07685
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
uam
Candidatus Uabimicrobium amorphum
Brite
KEGG Orthology (KO) [BR:
uam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
uam03016
]
UABAM_05778
Enzymes [BR:
uam01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
UABAM_05778
Transfer RNA biogenesis [BR:
uam03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
UABAM_05778
Prokaryotic type
tRNA splicing ligases
UABAM_05778
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BBM87369
UniProt:
A0A5S9F760
LinkDB
All DBs
Position
8118351..8119733
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AA seq
460 aa
AA seq
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MKEKQLLDLGVDPEDIEFAKELVENARAKGLNKKKVNRQLQLAVQKPEANFTNPYFGKLA
QKVYQDRRFKERKEPAPWKIWGEDLPEQAVLQMKNACRLPISWRGALMADAHQGYGLPIG
GVLATENAVIPYAVGVDIACRVKMTVFDSPAEDVDKNKDFLVDTLQKDTLFGIGKTFSKP
HDHEVLQEDWSFSKVTKHIKPRAIKQLGSSGSGNHFVEFGELTVSQDTLGLQAGTYLAVL
SHSGSRGAGSAVANHYSQLAMKLRPGLPKELQHLAWLTLDSEEGQEYWQAMELMGRYAAA
NHEIIHEKIIKSLGATPLLQIENHHNFAWKEVHDGRELIVHRKGATPAGKDDLGIIPGSM
VNSCYVVRGKGDETSLSSAPHGAGRVMSRRKAKQLFNWTDVNQMIKSKNVTLLSAGLDEA
PSVYKDIDMVMEYSNDLVEILACFQPRIVKMAEDGERPED
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaaaaacaattattagatttaggcgttgatcctgaagacattgaatttgctaag
gaacttgtagaaaatgcgcgtgcgaagggactcaataagaaaaaagtcaatcgccaattg
caattggcggtacaaaagccagaagcaaattttaccaatccttattttgggaaacttgcc
caaaaagtttaccaagaccgtcgattcaaagaacgtaaagagccagcaccatggaaaatt
tggggagaagatctaccagagcaggccgttttacaaatgaaaaatgcctgtcgtttaccc
atttcgtggcgcggagcactcatggccgatgctcaccaaggatatggtcttcccatcggt
ggagttttggctacagaaaatgccgtcattccctatgccgtcggagtggatatcgcgtgt
cgtgtaaaaatgaccgtatttgattctccagcagaagatgtggataaaaacaaagatttt
cttgtggacaccttacaaaaagatacactttttggtattggtaaaacattcagtaaacca
cacgaccacgaagtactacaagaagattggtcattttcaaaagtcacaaaacacatcaaa
ccacgcgctataaagcaattaggttcgagtggctcgggaaatcactttgttgagtttgga
gagcttaccgtatcacaagacactcttggtctacaagcaggcacgtatcttgcggtactt
tcgcatagtggtagtcgtggggcaggaagtgcggtggccaatcactactcgcagttggcg
atgaaattgcgtccaggtctgccaaaagagttacaacatcttgcatggttaactctagac
agtgaagaagggcaagagtactggcaagctatggaactcatgggaagatatgctgcggca
aatcatgagataattcatgaaaaaatcatcaagtccctgggggcaacacctctactacaa
atagagaaccatcacaattttgcgtggaaagaggtgcatgatggcagggaactcatcgta
caccgtaagggtgcaacccccgcaggaaaagatgacttaggtattatacctggttccatg
gtaaattcatgctatgtcgtacgtggtaaaggagacgagacatcactttcgagtgctcct
catggtgcaggaagagtcatgtcacgccgcaaggccaagcaattgttcaattggaccgat
gtcaaccaaatgattaagagcaaaaacgttactctactaagtgcaggtctcgatgaggcg
ccaagtgtttacaaagacatcgacatggtcatggaatactccaatgatctcgtcgaaatt
ttggcttgttttcaaccacgcattgtaaaaatggcagaagatggcgaacgacccgaggac
tag
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