Ursus americanus (American black bear): 123776290
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Entry
123776290 CDS
T07931
Symbol
LIG1
Name
(RefSeq) LOW QUALITY PROTEIN: DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
uar
Ursus americanus (American black bear)
Pathway
uar03030
DNA replication
uar03410
Base excision repair
uar03420
Nucleotide excision repair
uar03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
uar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
123776290 (LIG1)
03410 Base excision repair
123776290 (LIG1)
03420 Nucleotide excision repair
123776290 (LIG1)
03430 Mismatch repair
123776290 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
uar03032
]
123776290 (LIG1)
03400 DNA repair and recombination proteins [BR:
uar03400
]
123776290 (LIG1)
Enzymes [BR:
uar01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
123776290 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
123776290 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
123776290 (LIG1)
DNA replication proteins [BR:
uar03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
123776290 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
123776290 (LIG1)
DNA repair and recombination proteins [BR:
uar03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
123776290 (LIG1)
NER (nucleotide excision repair)
Other NER factors
123776290 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
123776290 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
PucR
DDR
Motif
Other DBs
NCBI-GeneID:
123776290
NCBI-ProteinID:
XP_045628157
LinkDB
All DBs
Position
Unknown
AA seq
912 aa
AA seq
DB search
MQRSIMSFFYPKKEGKVKKPEKETSNSIRETEPPPKVALKERNGEVPENDSPVKRPGRKV
ARVLSSEGEEEDEALTPSKGQKPAPGSPQVSPPSPATFPESSPSLSNTSPVDISPSGIPK
RRTARKQLPKRTIQDVLEEQGKEEDREAKRKKEEEAETSPESLTEPEVTQKKEAEGDRPM
TPPETSPAEPPPDGASEPEVAEKQQAREEDPAKPPARAPKPVSSFFAPRKPATKKEGKEE
GTGAARQEETKGPLDPSSYNPAKNNYHPIDDACWKPGQKVPYLAVARTFEKIEEVSARLR
MVETLSNLLRSVVALSPPDLVPVLYLSLSRLGPPQQGLELGVGDGVLLKAVAQATGRQLE
SVKAEAAEKGDVGLVAENSRSTQRLMLPPPALTAAGVFTKFRDIARLAGSASTAKKIDVI
KGLFVACRHSEARYIARALSGRLRLGLAEQSVLAALAQAVSLTPPGQGFPPAVVDAGKGR
TAEARKTWLEEQAMILKQTFCEVPDLDRIIPVLLEHGLERLPEHCKLSPGVPLKPMLAHP
TRGVSEVLKRFEEAAFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTGKYPDIISRIPK
IKLPSVTSFILDTEAVAWDREKQQIQPFQVLTTRKRKEVDAAEIQVQVCLYAFDLIYLNG
ESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDTDQIAEFLEQSVKDSCEGLMVKTL
DVNATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLAAYDEES
EELQAICKLGTGFSDEELEEHYRKLQALVLPTPRPYVRADGAVAPDHWLDPSAVWEVKCA
DLSLSPIYPAARGLVDGEKGISLRFPRFIRVREDKKPEEATTSAQVASLYRKQSQIQNQQ
GADLDSDSEDFY
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgtagtatcatgtcatttttctaccccaagaaggagggcaaagtgaaaaaacca
gagaaggagacctccaacagcatcagagagaccgaaccacctccaaaggtagcactgaag
gagcggaatggagaggtgcctgagaacgattctccagtgaagaggccagggcgcaaagtg
gcccgggtcctgagcagtgaaggggaggaggaagatgaagccctcacgccctccaaaggc
cagaagcctgccccgggctctccacaagtctcccctcccagccctgccacatttcccgag
agcagcccttccctctccaacacctctcctgtggacatctccccatcagggatccccaag
cggcgcacagctcggaagcagcttcctaagaggacaatacaggatgtcctggaggagcag
ggcaaggaagaggacagagaggccaagaggaagaaggaggaagaagctgagacctcaccg
gagagcctcacagaacctgaagtgacccagaagaaagaagcagaaggggaccggcccatg
acgccccctgagacctccccagcagagcccccgccagacggcgcctcggagcctgaggtg
gccgagaagcagcaggctcgggaggaggacccagccaagccgcccgccagagctcccaag
ccggtcagcagcttcttcgccccccggaaaccggcaaccaagaaagaagggaaagaggag
gggaccggcgcggcaagacaggaggagaccaagggacccctggacccctccagctacaat
cctgccaagaacaactaccatcccatcgacgacgcgtgctggaagccaggccagaaggtc
ccttacctggctgtggcccggacgtttgagaagattgaggaagtttctgctcggctccgg
atggtggagacgctgagcaacttgctgcgttctgtggtggccctgtcgcctcccgacctc
gtcccggtcctctacctcagcctcagccgccttgggccgccccagcagggcctggagctt
ggtgtcggtgacggcgtcctgctcaaggctgtggcccaggccacggggcggcagctggag
tctgtcaaggccgaggcagccgagaagggcgacgtggggctggtggccgagaacagccgc
agcacccagagactcatgctgcccccgcccgcgctcaccgccgccggcgtcttcaccaag
ttccgagacatcgcccggctggcgggcagcgcttccacagccaagaagatagacgtcatc
aaaggcctctttgtcgcctgccgccactcggaagcccgatacatcgccagagccctgagt
ggacggctgcgcctcgggctggcagagcagtcggtgctggccgcccttgcccaggccgtg
agcctcacgcccccaggccaaggattccccccggccgtcgtggatgctgggaagggcagg
acagcagaggcccgaaagacgtggctggaggagcaagccatgatcctgaagcagacattc
tgcgaggtgccggacctggaccggatcatccccgtgctgctggagcacggcctggagcgc
ctcccggagcactgcaagctgagcccaggggttcccctgaaaccgatgctggcgcacccc
acgcggggtgtcagtgaggtcctgaaacgcttcgaggaggcggctttcacctgcgagtac
aaatacgacgggcagagggcgcagatccacgtcctggaaggcggggaggtgaagatcttc
agcaggaatcaggaagacaataccggaaagtacccggacatcatcagccgcatccccaag
attaaactcccgtcagtcacgtccttcatcctagacacagaagctgtggcttgggaccgg
gaaaagcagcagatccagccattccaggtgctcaccacccgcaaacgcaaggaggtggac
gcggcagagatccaggtgcaggtgtgtctgtatgccttcgacctcatctacctcaatgga
gagtccctggtgcgtgagccgctttcccgacgccggcagctgctccgggagaatttcgtg
gagacggagggcgagtttgtctttgccacctccctggacaccaaggacacagaccagatc
gccgagttcttggagcagtctgtgaaagactcctgcgaggggctcatggtgaaaaccctg
gacgtcaacgccacctacgagatcgccaagagatcgcacaactggctcaagctgaagaag
gattacctcgatggcgtgggtgacaccctggacctcgtggtgatcggcgcctacctgggc
cgtggcaagcgggcgggccgctacgggggcttcctgctggccgcctacgatgaggagagt
gaggagctccaggccatatgcaagctcggaactggcttcagtgacgaggagctggaggag
cattaccggaagctgcaggccctggtgctgcccaccccacgcccctacgtccgggcagac
ggggctgtggcccccgaccactggctggaccccagcgccgtatgggaggtgaaatgtgcc
gatctgtccctgtcccccatctaccctgctgcccgcggcctggttgatggtgagaagggg
atctcccttcgcttccctcggtttatccgcgtccgtgaagacaagaagccggaggaggcc
accaccagtgcccaggtggcctcactgtacaggaagcagagtcagattcaaaaccagcag
ggcgcagacttggactccgactcggaagatttctactag
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integrated database retrieval system
