KEGG   Ursus americanus (American black bear): 123777935
Entry
123777935         CDS       T07931                                 
Symbol
ALYREF
Name
(RefSeq) THO complex subunit 4
  KO
K12881  THO complex subunit 4
Organism
uar  Ursus americanus (American black bear)
Pathway
uar03013  Nucleocytoplasmic transport
uar03015  mRNA surveillance pathway
uar03040  Spliceosome
uar05014  Amyotrophic lateral sclerosis
uar05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:uar00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    123777935 (ALYREF)
  09122 Translation
   03013 Nucleocytoplasmic transport
    123777935 (ALYREF)
   03015 mRNA surveillance pathway
    123777935 (ALYREF)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    123777935 (ALYREF)
  09164 Neurodegenerative disease
   05014 Amyotrophic lateral sclerosis
    123777935 (ALYREF)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:uar03019]
    123777935 (ALYREF)
   03041 Spliceosome [BR:uar03041]
    123777935 (ALYREF)
Messenger RNA biogenesis [BR:uar03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     123777935 (ALYREF)
    TREX complex
     123777935 (ALYREF)
Spliceosome [BR:uar03041]
 Complex C
  Other components
   EJC/TREX
    123777935 (ALYREF)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    123777935 (ALYREF)
SSDB
Motif
Pfam: RRM_1 FoP_duplication F07F6_N
Other DBs
NCBI-GeneID: 123777935
NCBI-ProteinID: XP_045630954
LinkDB
Position
Unknown
AA seq 256 aa
MADKMDMSLDDIIKLNRSQRGGRGGGRGRGRAGSQGGRGGGAQAAARVNRGGGPIRNRPA
IARGAAGGGGRNRPAPYSRPKQLPDKWQHDLFDSGFGGGAGVETGGKLLVSNLDFGVSDA
DIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL
VTSQIDTQRRPAQSVNRGGMARSRGSGGFGGGGTRRGARGGSRGRGRGTGRSSKQQLSAE
ELDAQLDAYNARMDTS
NT seq 771 nt   +upstreamnt  +downstreamnt
atggccgacaaaatggacatgtctctggacgacatcattaagctgaaccggagccagcga
ggcggccgcggcggaggccggggccgcggcagggccggctcccagggcggccgtggcggc
ggagcgcaggccgccgcgcgagtgaaccgaggcggcgggcccatccggaaccggccggcc
atcgcccgcggcgcggcgggcggcggcggcaggaaccggccggcgccctacagccggccg
aaacaacttcctgacaagtggcaacatgaccttttcgacagtggatttgggggtggcgca
ggcgtcgagactggtgggaaactgctggtgtcaaatctggattttggagtgtccgacgct
gatattcaggagctctttgctgaattcggaactctgaagaaggcggctgtgcactacgac
cgctccgggcgcagtttagggacagctgacgtgcactttgaacggaaggcagacgccctg
aaagctatgaaacagtacaacggggtccctctggatggccgccccatgaacatccagctc
gtcacgtcacagattgacacgcagcggagacctgcgcagagtgtaaacagaggcgggatg
gctagaagccgtggctccggaggttttggcggcggtggcactcggagaggcgctcgcgga
ggaagccggggccgaggcagaggcactggcaggagttcaaagcagcagctttctgcagag
gagctggatgcccagctggacgcttataacgcgagaatggacaccagttaa

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