Ursus americanus (American black bear): 123778815
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Entry
123778815 CDS
T07931
Symbol
PALB2
Name
(RefSeq) partner and localizer of BRCA2 isoform X1
KO
K10897
partner and localizer of BRCA2
Organism
uar
Ursus americanus (American black bear)
Pathway
uar03440
Homologous recombination
uar03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
uar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
123778815 (PALB2)
03460 Fanconi anemia pathway
123778815 (PALB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
uar03400
]
123778815 (PALB2)
DNA repair and recombination proteins [BR:
uar03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
123778815 (PALB2)
FA (Fanconi anemia) pathway
Downstream FA components
123778815 (PALB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PALB2_WD40
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
123778815
NCBI-ProteinID:
XP_045632393
LinkDB
All DBs
Position
Unknown
AA seq
1177 aa
AA seq
DB search
MEDPPGKPLSCEEKEKLKEKLAFLKREYSKTLARLQRAQRAEKVKNSIKKTVEEHDCLLQ
QEISSQLKHSEPKNKVSPCDTLQISTHLDEETGEKTPITLDIEPESFNPGHGPVEELHIQ
RIGDIQEHFLYQVSGSGDKKRQNKLQGRRKKQQKRTSTPRVRESFFDANSLILSGKTLKD
QEEVNRENPRTPVNERTCLSSSTSDIPGSPAPVTETNIRGVLIPPTAKSQSSVDALVRGN
NFPRVPPFATFTLSSSSSGQHLEHKPPKGDCELTTHNLKNINPASPVNLEAQSRRVTVSA
DNPEVNRAISASGQRPRSPDLEAVNLYSINELAYNLPANESQNLKGQNHTEESLTSHNTL
DGRNESLQKNEVVSQSKRLSPEIISPASAENQTHSCTMLEGLLFPAEYYVRTTRRMSNCQ
RKVALEAVIQSHLGVSKKGSKNKSKEATKNVNLCSEETDQNEIRTSDTCTRQASSKRPQK
RLLLTEISSPPEPTKDNLPRKAVTQPSRRRHGGKRKSISPPVLEHHELLLPIRGTTVVDQ
SKEEVTLHKDQNEKAISHGKEDHCHKEDSLSSGNNAYLALDSAVFRASFQENEMLSLKQL
SSFLKITDFQLPDEVFGPLKLEKLKSCSEKPVEPFVANMFGQKHLKEGNCSVLEELTPPQ
IDIEMEDLEEEIRFLPRKAQPKTSNLTSRSQKKGLSSSILLFTPLNTGAPEDNNRTTANL
CSPAFPILGTTPAFGSQAHCDKVSAEAVGPTCSTPPLPHLKDSDQKQRDGWASPSKSDGS
LVVSGREGQPSCDSDSRPQAAPLPTESESLKDSQLCGNAQPESWKQFPEQTEAADLPTCT
SLNPGRLQLVSKLKNPSGSCSVDVSAMWWEIAGSKEPCIITACEYIVSLWKPLDTRQWEK
LYSWHFTEVPVLQIVPVPDVCNLVCVALGNLEIREIRALLCSSDGKREKQVLLSSGNIKA
VLGLTERRLVSSSGTLCDQQVEIMTFAEDGGNKEKQFLMSPEETVLTFAEVQGRQEALLG
TTIMNNIVIWNLKTGQLLKKMHIGDSYQASVCHKAYSEMGLLFVVLSHPCAKESEPLGSP
VFQLIVMNPKTALSVGVMPYCLPQGQAGRFLEGDVKDHFAAAVLTSGTIAIWDLLLGHCT
ALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYRY
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atggaagatcctcccgggaagcccctcagctgtgaggagaaggaaaagttgaaggaaaaa
ttagcattcttgaaaagggagtacagcaagacactggcccgccttcagcgtgcccaaaga
gctgagaaggttaagaattctattaaaaaaacagtggaagaacatgattgcttgctccag
caggaaatttcatcacagctaaagcactcagaacctaaaaataaagtatctccttgtgac
acattacaaatcagcactcatctggatgaagaaactggagaaaagacacctatcacactt
gacattgagcctgagtccttcaaccctggacatggccctgtggaggaattacatatacaa
agaataggtgatatccaagaacattttctctaccaggtcagtggctctggtgataagaaa
aggcagaataagctgcaagggagaagaaaaaagcagcagaagagaacatctactccacga
gtgagagaatctttctttgatgcgaattcactcatactctctggaaaaacactaaaggat
caggaggaagtcaatagagaaaatcctaggacacctgtaaacgaaagaacttgtctttcg
agttctacgtctgacattcctggttctccagcaccagtgacagaaactaatataaggggt
gtattaattccaccaactgccaaatcacaaagcagcgtcgatgcgctcgtacgaggaaat
aatttccccagggtgcctccatttgctacatttactctgtcaagtagcagtagcggtcag
caccttgaacataagcctcctaaaggtgactgtgaactcacaactcacaatttaaaaaac
attaaccctgcttcacctgtaaacctagaggcacaaagcaggagagtgacagtctctgca
gataacccagaggtaaatagagctataagtgcaagtgggcagcggcctagaagtcctgac
ttagaggcagttaatttatactctataaatgaactcgcttataacttaccagccaatgaa
agccaaaacttaaaaggacagaatcacacagaggagtctttaacatctcataacactctt
gatggtagaaatgaaagtcttcagaaaaatgaggttgtaagtcaatctaagcgtcttagc
ccagaaataatctctcctgcttctgcagaaaatcaaacacattcttgtacaatgctggaa
ggccttttatttcccgcagaatattatgttagaacaacacgacgcatgtcaaattgccag
aggaaagtagccctggaggctgtaattcaaagtcatttgggtgtcagtaagaaagggtct
aaaaataaaagtaaggaggcaactaaaaatgtaaacctttgcagtgaagaaactgaccag
aatgaaattaggacatctgacacatgcacaagacaagcaagttccaaaagacctcagaaa
cgtctcttgttaactgaaatcagctctccccccgagcccactaaagataaccttcccagg
aaggcagttacgcagccatctcgtagaagacacggaggaaaaagaaagtcaatctccccg
cctgtattagagcatcatgaactacttttgccaatccgtgggacgacagttgttgatcaa
tccaaggaagaagtcaccttacataaagatcagaatgaaaaggcaattagtcatgggaag
gaagatcactgtcataaagaggactccctttcttccggaaataatgcttatctagctttg
gattctgctgtgttcagggcttcattccaggagaatgaaatgctaagtttaaagcaactg
tcgtcttttctcaaaatcacagattttcagttacctgatgaagtctttggacctcttaag
cttgaaaaactgaagtcctgttcagaaaaaccggttgagccttttgtagcaaacatgttt
ggacagaagcatcttaaggagggaaactgtagtgttctggaagaactgactcctccacaa
atcgatatcgaaatggaggacttggaagaggaaattcgttttctcccaagaaaagcacaa
cctaaaacgtcaaacctaacaagccggtctcagaagaagggcctttcttcatccatacta
cttttcactcctttaaatactggtgcccccgaggataataacaggacgacagcaaacctg
tgttcgcctgctttccccatcttaggcactactccagcttttggctcccaagcacactgt
gacaaagtgtctgcagaggctgtcgggccaacttgctctacacccccacttcctcactta
aaagacagtgatcagaaacaacgcgacggttgggccagcccgtcaaaatcagatggcagc
ctggttgtgtcaggtagggaaggacagccttcctgtgactctgattctcgtccccaggca
gcacctcttcccactgagtcagagtctctcaaagacagtcagctgtgtggaaatgcacag
ccggagtcatggaaacagttccctgaacagactgaagcagcagaccttcctacttgtact
agcttaaacccaggccgccttcaattggtttcaaagttaaagaatccttctggttcctgt
tcggtggatgtgagtgccatgtggtgggaaatagcgggttccaaagagccatgtatcata
actgcctgtgaatacatagtttctctttggaaacctctcgatactaggcagtgggaaaaa
ctttattcctggcacttcacagaggttccagtattacagatagttccagtgcctgatgtt
tgtaatctcgtgtgtgtggctttgggaaatttggaaatcagagaaatcagggcattactt
tgttcctctgatggtaaacgtgaaaagcaagtactactgagttctggaaatataaaagct
gtgcttggcctgacagagaggaggctagtcagtagcagtgggaccctttgtgaccaacaa
gtagaaatcatgacatttgcagaagatggaggaaacaaagaaaaacaatttttgatgtcc
cctgaagagactgtactaacttttgctgaggtccaagggaggcaggaagctctgcttggt
accactatcatgaacaacattgttatttggaatttaaaaactggtcagctcctgaaaaag
atgcatattggtgattcctaccaagcttcagtctgtcacaaagcctattccgaaatgggg
ctcctgtttgttgttctgagccatccttgtgccaaagagagtgaaccactgggaagccct
gtgtttcagctgatcgtgatgaacccgaagacagccctgagtgtgggcgtgatgccctac
tgtcttcctcaagggcaggctggaaggttcctggaaggggatgtgaaagatcattttgca
gctgcagtattgacttctggaacaattgccatttgggacttacttctaggtcattgtact
gctctcctcccacctgtctctgaccagcattggtcttttgttaaatggtcaggtacagat
tctcatttgctggctggacaaaaagatggaaatatatttgtataccgctactaa
DBGET
integrated database retrieval system
