Ursus americanus (American black bear): 123779990
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Entry
123779990 CDS
T07931
Symbol
CIC
Name
(RefSeq) LOW QUALITY PROTEIN: protein capicua homolog
KO
K20225
capicua transcriptional repressor
Organism
uar
Ursus americanus (American black bear)
Pathway
uar05017
Spinocerebellar ataxia
Brite
KEGG Orthology (KO) [BR:
uar00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05017 Spinocerebellar ataxia
123779990 (CIC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
uar03000
]
123779990 (CIC)
Transcription factors [BR:
uar03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
123779990 (CIC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF4819
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
123779990
NCBI-ProteinID:
XP_045634727
LinkDB
All DBs
Position
Unknown
AA seq
2523 aa
AA seq
DB search
MKPMKKACVGLPGAGSGGKSPPATRAKALRRRGAGEGDKPEEEDEEAQLQQQPPGPEEAE
EGEEEESERGPAAEGLPPELHSDDPAAPGPAEDPKVEGEASRWEPSLSRKTATFKSRAPK
KKYVEEHGAGSGSSGAAGAPEERARTPEEAGTLGVPPRPPTSTRSSSTDTASEHSADLED
EPAEACGPGPWPPSGTSGGYDLRQLRSQRVLARRGDGLFLPAVVRQVRRSQDLGVQFPGD
RALTFYEGAPGGGVDVVLDATPPPGAVVVGTAVCTCVEPGVAAYREGVVVEVATKPAAYK
VRLSPGPNAQPGPPAALPQPPQLPHRDPEEAVWVARSSLRLLRPPWEPEALPRKPPAGPE
EEQAEPGGALPPCPAALDPKQPEDAEVSKISFGGNLGTCEEGEEKHPPALGTPALLPLPP
PQLLSPPPKSPAFAGPGRPGEQPSPCQEGSQGGSRSSSVASLEKGAAPAARARTPLTAAQ
QKYKKGDVVCTPNGIRKKFNGKQWRRLCSRDGCMKESQRRGYCSRHLSMRTKEMEGLADS
GPGGAGRPAGVAAREGSTEFDWGDETSRDSEASSVAARGDSRPRLVAPADLSRFEFDECE
AAVMLVSLGSSRSGTPSFSPVSTQSPFSPAPSPSPSPLFGFRPANFSPINASPVIQRTAV
RSRHLSASTPKGGVLTPPDLGPHPPPPAPRERHSSGILPTFQTNLTFTVPISPGRRKTEL
LPHPGALGAPGAGGGGATPDFPKSDSLDSGVDSVSHTPTPSTPAGFRAVSPAVPFSRSRQ
PSPLLLLPPPAGLTSDPGPSVRRVPAVQRDSPVIVRNPDVPLPSKFPGEVSTAGEVRAAG
PGRGCRETPVPPGVASGKPGLPPPLPAPVPITVPPAAPTAVAQPMPTFGLASSPFQPVAF
HPSPAALLPVLVPSSYTSHPAPKKEVIMGRPGTVWTNVEPRSVAVFPWHSLVPFLAPSQP
DPSVQPSEAQQPASHPVASTQSKEPAESAAIAHEQPAGGTGSADPGRPPGATCPESPGPG
PPHTFGVVEPGKGPPPTTEEEAPGPPGEPRLDSETESDHDDAFLSIMSPEIQLPLPPGKR
RTQSLSALPKERDSSSEKDGRSPNKREKDHIRRPMNAFMIFSKRHRALVHQRHPNQDNRT
VSKILGEWWYALGPKEKQKYHDLAFQVKEAHFKAHPDWKWCNKDRKKSSSEAKPTSLGLA
GGHKETRERSMSETGTAAAPGVSSELLSVAAQTLLSSDTKAPGSGSCGTERLHAVGGPGS
ARPRAFSHSGVHSLDGGEVDSQALQELTQMVSGPASYSGPKPSAQYGAPGPFSASGEGGT
LAASGRPPLLPTRASRSQRAASEDMTSDEERMVICEEEGDDDVIADDGFGATDIDLKCKE
RVTDSESGDSSGEDPEGSKGFGRKVFSPVIRSSFTHCRPPLDPEPPGPPDPPPPAFGKGY
GPTPSSSSSSSPASSSASAATSFPLGSGTFKAQESGQGSTAGPLRPPPPGAGGPVTPSKA
TRFLPTDPAAFRRKRPESVGGLEPPGPSVIAAPPGGGGSVLQTLVLPPNKEEREGSGTRM
PSAPAPSLAYGAPAAPLSRPAATMVTNVVRPVSSTPVPIASKPFPTSGRAEASPNDTAGA
RTEPVTGSRAPGSSPLGVSLVYSDKKSAAATSPAPHLVAGPLLGTVGKAPATVTNLLVGT
PGYGAPAPPAVQFIAQGAPGSGATTGSGAGAGSGPNGPVPLGILQPGALGKAGGITQVQY
ILPTLPQQLQVAPAPASAPGTKAAAPGGPAPTTSIRFTLPPGTSTNGKVLAATAPTPGIP
ILQSVPSAPPPKAQSVSPVQAPPPGGSAQLLPGKVLVPLAAPSMSVRGGGAGQPLPLVSP
PFSVPVQNGAQPPSKIIQLTPVPVSTPSGLVPPLSPATLSGPTSQPQKVLLPSSTRITYV
QSAGGHALPLGTSPTSSQAGTVTSYGPTSSVALGFTSLGPSGPAFVQPLLSGQAPLLTPG
QVGVSPVPSPQLPSTCTAPGGPVITAFYPGSPAPTSSAPLAQPSQAPPGLVYTVATSTTP
PTATILPKGPPAPATATPAPTSPFPNATAGSMTYSLVAPKAQRPTPKAPQKVKAAIASIP
VGSFEAGAPGRSGPAARQPLEPGPAREPPTPESELEGQPTTPVPPPPPETWAPTARSSPP
PPPPAEERTGTKGPETMASKFPSSSSDWRVPGLGLESRGEPPTPPSPAPAPAPAPGSSSS
NNEGSSGRAAGDTPERKEAAGTGKKVKVRPPPLKKTFDSVDNRVLSEVDFEERFAELPEF
RPEEVLPSPTLQSLATSPRAILGSYRKKRKNSTDLDSAPEDPTSPKRKMRRRSSCSSEPN
TPKSAKCEGDIFTFDRTGTEAEDVLGELEYEKVPYSSLRRTLDQRRALVMQLFQDHGFFP
SAQATAAFQARYADIFPSKVCLQLKIREVRQKIMQAATPTEQPPGAEAPLPGPPPTGTAA
APSPTPSPAGGPDPTSPGSDSGTAPAAPPLPPPPEPGPGQPGWEGPPQPSPPPPGPSTAA
TGR
NT seq
7572 nt
NT seq
+upstream
nt +downstream
nt
atgaagccaatgaagaaggcatgtgtcggcctcccaggtgctggcagtggcggcaagtcc
ccaccagccactcgggccaaggccctgcgacggcgaggggctggggagggcgacaagcca
gaggaggaagacgaagaggcgcagctgcagcagcagcctccggggccagaagaggctgag
gagggtgaggaagaggagtccgagcggggccctgcggctgaggggctgcccccagagctg
cactctgacgacccggcggccccaggccctgctgaggaccccaaggtagagggggaggcg
agccgttgggagccctctctcagccggaagacggccacgttcaagtctcgagcgcccaag
aagaagtatgtggaggagcatggagccggcagcggtagcagtggggcggccggggcccct
gaagagcgggcacggacccctgaggaggccggcaccctgggggtccctccacggccaccc
acctctacccgttcctcttccactgacacagccagcgagcactcagccgacctggaggat
gagccagctgaagcttgtgggccaggcccctggcccccaagtggcaccagtggtggctat
gacctgcggcagctgaggtcccagcgggtgctggcccggcgtggcgacggcctcttcctg
ccggccgtggtgcgccaggtgcgccgaagccaggacctgggggtacagttccccggggac
cgggccctgacgttctacgagggggcacccggtggcggtgtagatgtggttttggatgcc
acgccgccgccgggtgccgtggtggtgggcacagctgtctgtacctgcgtggagcccggg
gtggctgcctaccgtgagggtgtggtggtggaagtggccaccaagccagctgcctacaag
gtccgcctcagccccggccccaacgcccagccggggccgccggctgccctgccgcagccc
ccgcagctgccacaccgggaccccgaggaggctgtgtgggtggcccgctccagcttgcgc
ctgctgcggcccccctgggaacccgaggccctgccgaggaagccccctgcgggccccgag
gaggagcaggctgagccggggggcgccctgcccccctgccctgctgccctggaccccaag
cagcctgaggatgctgaggtgtcgaagatcagctttggtggcaacctggggacttgcgag
gagggtgaggagaagcacccgccggccctgggcaccccggccctgctcccgctgccccca
ccccagctcctgtcgccgccacccaagtccccagctttcgcgggcccgggccgccctggg
gagcagccctcaccctgccaggaggggagccagggcggcagcaggagcagcagcgtggcc
tctctggagaagggggctgcgccagccgcccgggcccgcacaccgctgactgccgcccag
cagaagtacaagaagggtgacgtggtctgcacgcccaacggaatccgcaagaaattcaac
ggcaagcagtggcgccggctgtgctcccgagacggctgcatgaaggagtctcagcggcgg
ggctactgctcgcgccacctgtccatgcgaaccaaggagatggagggcctggcggacagc
ggccctggtggggccggacggccagcaggcgtggcggcgcgtgagggcagcaccgagttt
gactggggtgatgaaacttcgagggacagtgaggccagcagcgtggcggcccgtggggac
tcgcgcccacgcctggtggctcctgctgacctgtcccgctttgagtttgatgagtgtgag
gcggccgtgatgctggtgtcgttgggcagctctcgctccggcacaccctccttctctcct
gtgtctacgcagtcgcccttctcacctgccccatcgccctccccgtcgccactctttggc
ttccgccccgccaacttcagccccatcaatgcctcaccagtcatccaacgcactgctgtc
cgcagccgccatctgagtgccagcaccccgaagggaggcgtgctgacaccaccagacctg
ggcccccacccaccgccacctgcccccagggagcgccattcttctggcatcctacccacc
ttccagaccaacctgaccttcaccgtgcccatcagccctgggcggagaaagaccgagctg
ctgccccacccaggggccttgggggcccctggcgcagggggcggaggagccaccccggac
ttccccaagagcgacagcctagactctggtgtggactccgtgtcccacacacctacacct
tccacaccggctggcttccgggctgtgtcacctgccgtgcccttctcccgttcccgccag
ccctcgccattgctgctgttgcccccacctgctggcctgacctcggatcctgggccttct
gtgcgcagggttcctgctgtgcagcgggactcacccgtcattgttcgcaaccccgacgtg
ccgctgccctccaaattccctggggaggtgagcactgctggcgaggtgcgggcagcggga
cctgggcggggctgccgagagaccccggtgccccctggggtggccagtgggaagcctggc
ctgcccccacctctgccagcccccgtgcccatcaccgtgcctccagccgcgccgactgcc
gtggcccagccgatgcccacctttggcctggcttcttcacccttccagccggtggcgttc
cacccctcacctgctgccctattgcccgtcctggtgcccagcagctacaccagccatcct
gcccccaaaaaggaagtcatcatgggccgacctgggacagtgtggacgaatgtggaacct
cgctctgttgctgtgttcccctggcactccttagtcccctttctggcccccagccagccc
gacccctctgtgcagccaagtgaggcccagcaacctgccagccacccagtggcctccacc
cagagcaaagaacctgctgagtcggcggctattgcccacgagcagccagcaggtgggaca
gggagtgctgatcctgggcggccccctggagccacctgccctgagagcccagggcctgga
cccccccacactttcggggttgtggaacctggaaagggtccccctcccaccactgaggag
gaggcccccggccctccaggagagccccggctggacagcgagacggagagtgaccatgat
gatgccttcctctccatcatgtctcctgagatccagttgcccctgccacccgggaaacgc
cggacccagtccctcagtgccctgccaaaggaacgagactcctcttcggagaaggatgga
cgcagccccaacaagcgggagaaggatcatatccggcggcccatgaatgccttcatgatc
ttcagcaagcggcaccgggccctggtccaccagcgtcaccccaaccaggacaaccggacc
gtcagcaagatcctgggcgagtggtggtacgccctggggcccaaggagaagcagaagtac
catgacctggccttccaggtgaaagaggcccactttaaggctcacccggactggaagtgg
tgcaacaaggaccggaagaagtccagctcagaggccaagcccacgagcctggggctggca
ggagggcacaaggagactcgggagcggagcatgtcggagacagggactgctgctgcccct
ggagtgtcctcggagctcctgtctgttgcagcccagacactcttgagctcggataccaag
gctccggggagcggctcctgtgggacagagcgtctgcacgcagtggggggacctggctcg
gcccggccccgagccttctcccacagtggggtccacagcctcgatggtggagaagtagat
agccaggcactacaggaactgactcagatggtgtctggccctgcatcctattctggtcca
aagccttccgcccagtatggggctccaggccccttctcagcctccggtgagggaggtacc
ctggcggccagtggccgacccccgctgctgcctacccgggcctcccgttctcagcgtgca
gccagtgaggacatgaccagtgacgaggaacgcatggtcatctgcgaggaggaaggagac
gatgatgtcattgctgacgacggcttcggcgccactgacattgacctcaagtgcaaggag
cgggtgactgacagtgagagtggagacagctctggggaggatccagagggcagcaagggc
tttggccggaaggtcttctcaccagtgattcgttcctcctttacccactgccgcccaccg
ctggaccctgagcccccagggcccccggatccaccacctccagcctttggcaaaggctac
gggcccaccccatcatcctcctcctcgtcctcacctgcctcctcctcagcctcagcggcc
acctccttcccactgggctcagggaccttcaaggcccaggagtcaggtcagggcagcacg
gcaggcccactacggcccccaccccctggggctgggggcccagtgacaccttccaaggcc
actcgtttcctcccaacggatcctgccgccttccggcgcaagagacctgaaagtgtggga
ggcctggagccaccaggtccctcggtcattgcggcacctcctggcgggggtggaagtgtc
ctgcagacgctggtcctgcccccaaataaggaggaacgggaaggcagcggaacccgcatg
ccctcggccccagccccatcactggcctatggagccccagcagcccccctgtcccgccca
gctgctaccatggtcaccaacgtggtacggcctgtcagtagcactcctgtgcccatcgct
tctaagcccttccccacctctggccgggctgaggcatctccaaatgacacagcaggtgcc
aggactgagccggtcacagggtcccgggcacctgggagctccccgctgggtgtaagctta
gtgtattcggacaagaagtctgcagcagccacctcgccagccccgcatctggtggctggg
cccctcctgggcactgtggggaaggcccctgccacagtcaccaacctgctggtgggcaca
cccggttatggggccccagcgccccctgctgttcagttcatagcccagggggccccgggc
agtggggccactacaggctcaggagcaggtgctgggagtggccccaatgggccagtgcct
ctgggcatcctgcagccaggtgccttgggcaaggctgggggcatcacccaggtgcagtac
atcctgcccacgctgccccagcagcttcaggtggcgcctgccccagcatcagcccctggg
accaaggcagcagctcccggtggccccgcacccaccaccagcatccgtttcaccctccca
ccgggcacctccaccaacggcaaagttctggcggccactgcacccactcctggcatcccc
atcctgcagtccgtaccctccgccccgccccccaaagcccagtcggtttctcctgtgcag
gccccgcccccgggtggatcagcccagctgctacccgggaaggtactggtgcccctggca
gcccctagcatgtccgtgcgaggtggaggggctggccagccattgcccctggtgagccct
cctttctcagtacctgtgcagaatggagcccagccacccagcaagatcatccagctgaca
ccggtgcctgtgagcacacccagcggcctggtgccgcccctcagcccagccacactctcc
ggacccacctcacagcctcagaaggtcctgctgccctcctccaccagaatcacctacgtg
cagtcggcaggtgggcacgcgttgcccctaggcaccagccctacgtccagccaggctgga
acagtcacctcgtatgggcccacgagttcagtagccctaggcttcacctcactggggccc
agcggacccgccttcgtgcagcccctgctttcaggccaagccccgcttctgactcctggc
caggtgggcgtgtcgcccgtgcccagcccccagctgccgtccacctgcaccgcccccgga
ggtcccgtcatcacggcgttttaccctggcagccctgcacccacgtcctcagcacccctg
gcccagccgtctcaggctccccctggcctggtctacaccgtggccactagcaccacccca
cctactgccaccatcctgcccaagggcccaccggccccagccactgccaccccggcccct
actagccctttccctaatgccacagcaggctctatgacctacagtttagtggcccccaag
gcccagcggcccacccccaaggccccccagaaagtgaaggcggccatcgccagcattccc
gtgggttcctttgaggcaggtgcccctgggcggtcaggccctgcagcccggcagcccttg
gagcctggcccagcccgggagccccctacccctgagtctgagcttgaggggcagcctacg
acaccggtccctccaccgcccccagagacctgggctcccacagcccggagcagcccccca
ccgcccccgcctgctgaggagcggacaggcaccaagggtcctgagaccatggccagcaaa
ttccccagctcgtcttcagactggcgagtccctggactgggtctggagagccgtggggag
cctcccacccctcccagcccagcgccagctccggccccagcccctggcagcagcagcagc
aacaacgagggcagcagtgggagggcagccggggacacccccgagcgcaaggaggccgct
ggtaccggcaagaaggtgaaggtgcggcccccgcccctgaagaagacctttgactctgtg
gacaacagggtcctgtcggaggtggacttcgaagagcgctttgctgagctgcccgagttc
cggccagaggaggtgctgccttcaccgaccctgcagtctctggccacctcgccccgggcc
atcctgggctcctaccgcaagaagaggaagaactccactgacctggattcagcccccgaa
gaccccacttcgcctaagcgcaagatgaggagacgctccagttgcagctcagagcccaac
acccctaagagtgccaagtgcgagggggacatcttcacctttgaccgtacaggtacggaa
gccgaggatgtgctcggggagctggaatacgagaaggtgccatactcctcactgcggcgc
accctggaccagcgccgggccctggtcatgcagctcttccaggaccatggcttcttccca
tcagcccaggccacggcagccttccaggcccgctacgcagacatcttcccctccaaggtc
tgtttgcagttgaagatccgcgaggtgcgccagaagatcatgcaggcggccactcccacg
gagcagccccctggagccgaggcccccctccccggaccaccccccactggcactgctgct
gccccttcccccactcccagccctgctgggggccctgaccccacctcacctggctcggac
tctggcacagccccggctgccccgccactgcctccacctccagagccgggtcccggacag
cctggctgggagggccccccccagccctcccccccgccccccggcccctccacagctgcc
acaggcaggtga
DBGET
integrated database retrieval system
