Ursus americanus (American black bear): 123781239
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Entry
123781239 CDS
T07931
Symbol
FOCAD
Name
(RefSeq) focadhesin isoform X1
KO
K27498
focadhesin
Organism
uar
Ursus americanus (American black bear)
Brite
KEGG Orthology (KO) [BR:
uar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
uar03019
]
123781239 (FOCAD)
Messenger RNA biogenesis [BR:
uar03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
123781239 (FOCAD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Focadhesin
DUF3730
HEAT
Motif
Other DBs
NCBI-GeneID:
123781239
NCBI-ProteinID:
XP_045636589
LinkDB
All DBs
Position
Unknown
AA seq
1805 aa
AA seq
DB search
MSDDIRKRFEFPNSLIQSQAVGHLIAAVLKENGFSEKIHQSTNQTPALNLLWEKCCSDNV
VVRTACCEGLVALVAQDHAEFSYVLNGLLNLIPSTRNTHGLIKAIMKLLQMQALKEGQGG
EKNIRNLYTIRNHPQPLITVLEHRPDCWPVLLQQLTAFFQQCPERSEVSCIQIMAPFLWY
LYCEPSQLQEYAKLRLTLLKVLLQPRVSGDPGQPSVLEQQILQLCCDMVPCLQVKDLIQT
TEVMLFIEEVYLSLLRHPVFWKIQLTQLTLQLLCVCEVSLTITGECSSLIHLLEHGVELL
KEDFPVELVTVGIALLLLQTPASQQKPILSLALKLLSVAEGQKIPRSSLVLVMPLLQILS
STALEDCISVEEEGPSRQHLALNLLEMVQQESYRDDHQKLSYKLTFPITSMYGSIFTAWR
VLEVMREESAASDWLFSVESLLPITTVIPAHVFLLLAHLLVEDQGQNLRQILKVTTLLAQ
ADSSQVPNLIPVLMFKLGRPLEPVLYNDILYTLPTLGVHKVCIGQILRVIQLLGTTPQLR
AVTLRLLTSLWEKQDRVYPELQRFMAMSDVPSLSVGKEVQWEKLIAKAASIRDICKQRPY
QHGADMLAAVSQVLNECTKPDQATPAALVLQGLHALCQAEVVCIRSAWNALSPKLSCDTR
PLILKTLSDLFSLVPSLTVNTAEYENFKVQVLSFLWTHTQNKDPVVANAAYKSLSRFSAG
EHTILHLPEEIRPEIPTPNELDEDEDDEGDEKDLDLSIPGSCYLKLLSLTAPLVLPALEE
FFTSLVKQEMVNMPRGVYHSALKGGVRSDQGKTVAGIPNFILKMYETNKQPGLKPGLAGG
MLFCYDVSTYQSKDGKPLNRLMASRGRSFKQTSLALVHEVHIQLSEWHRAIFLPQAWLAY
MSRAYHAILQGRTGELDLQLKHGKEGPEEVQYKKGTAWLWVRDMLTEEITKAAAKESPVV
KGNALLALSSLAVVVSRHEASLSSDSDGVPEVQPNFLSMKEWVSMVSDTLLVIVDSHYQP
RGQLFSSFYYKSYSGENTASAIARSAAATALSLLVPVFIISCKEKVEEILNMLTARLPGK
PRADESQAVQIHMGLALGMFLSRLCEEKLSDISGQQMNLLLMKSLDALENCCFDPSLEYN
TGCILGVGLVLSLMSHSSQTESRVHVAASLRKLSTYLDDSGSQSRTFQEVLAYTLSCVCT
SAFSTGIVEAEEAEEVMNKLRMLVENNQQTSGFALALGNLVHGLSVCGHGKAEDLGHRLL
PAWIRIVLAQGTPTMLCLAALHGMVALVGSEGDVIQLKSEAIQSSDFQARLNEVIKTVTQ
VISVSGVIGLQSNALWLLGHLHLSTLSSSQSRTSVPTDYSYLPESSFMRAAIGFFVTGGK
KGPESVPPSLLKVVMKPIAAVGESYQYPPVNWAALLSPLMRLNFGEEIQQLCLEIMVTQV
QSSQNAAALLGLWVTPPLVHALSLNIKKYLLVSTPLWIKHVSDEQILGFVENVMVAVFKA
ASPLLHPELCGSALQGLSQAMKLPSPTHHLWSLLSEATGKIFDLLPNKIRRHDLELYVGV
ARCLSEMTDDEASRVAQLTESNLEKAAFVRLYLVSQGRFPLMGLMDVLSVAVQHPGKDTL
AWMVLHGLYQARVVSHANTGVLKRMEWLLELMGYIRNIAYQSTSVQNVTLDEALDFLLLL
FAAAVVTWADHAAPLLLGLSASWLPWHREGGPAGSASSFLGRSPVHRVTLQEALTLLPGS
MPLLLQKEPWKEQTQKFIDWLFVIMESPKEGLSAKSRDLLKATLLSLRVLPEFKKKAVWT
RAYGW
NT seq
5418 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatgatatcaggaaaaggtttgaatttccaaattctcttatccaatcacaggct
gtgggtcatctaattgctgcagtcctgaaggaaaatggtttttcagaaaagatccaccaa
tccacaaaccagactccggctttgaacttgctgtgggagaagtgttgcagtgataatgtg
gtggttcgaacagcctgctgcgagggtctcgtggcccttgtcgctcaggatcacgcggag
ttcagctacgtgctcaatgggctcctcaacctgattccgtccaccaggaatacacatggc
ttgataaaagccattatgaaattattacaaatgcaagctcttaaggaaggacaaggtggg
gagaagaacattcggaatttatatactattagaaatcacccccagcctttgatcactgtg
ctcgaacacagacctgattgctggccagtacttttgcagcagctgacggcttttttccag
caatgccctgaaaggtcagaagtttcgtgtatccaaataatggcaccgtttctatggtat
ctgtattgcgaaccatcccagttacaagaatacgctaaactccgtctaaccctgctgaaa
gtcttacttcaaccccgggtgtctggtgacccaggacaaccatcagtcttggaacaacag
atacttcagctgtgttgtgacatggtcccatgtttgcaggttaaagatttgatccagaca
acagaagtgatgctgtttattgaggaagtatatttaagccttctgcgtcatcccgttttc
tggaaaattcagcttacccagctcacccttcagctgctgtgtgtctgtgaagtcagctta
acgataactggggaatgctcatctttaattcaccttttagagcacggtgttgaacttctg
aaggaggattttcctgtcgaactggtcaccgttggaatagctttattgctgctacagact
ccggcaagtcagcagaagccaatcctaagtctagctttgaagctcctctctgttgccgag
ggtcagaaaatcccaaggtcatccctggtgctagtgatgccgcttctgcagatactatct
tctaccgccttggaagactgtatatccgtggaggaagaaggtccctcgaggcagcatttg
gctttgaaccttttggaaatggtacagcaggagtcctacagagatgaccaccaaaagctt
tcctacaagctcacgttccccataaccagcatgtatgggtcaatatttacagcctggagg
gtcctggaagtaatgagagaagagtctgcggccagtgactggctgttttccgtagagtcc
ttgctccctatcaccacagtgatccctgcgcatgttttccttttgctggctcacctcctt
gttgaagatcaagggcaaaatcttcgccagatactgaaggtcactacgttattagcccaa
gcagattcctctcaggtaccaaatctgattccagttttgatgttcaaattgggaagacca
ctggaacctgtattatataatgacatcttgtatactttacctacacttggtgttcacaag
gtgtgtataggacaaattctgcgagtgatccaacttcttggaaccactccacaactaaga
gccgtcactctgcgcttgttgacatctttgtgggaaaagcaggatcgtgtctaccctgaa
ctgcagcgtttcatggccatgtctgatgtgccttctctgtctgtgggcaaggaagtccag
tgggaaaaactcatcgccaaagcagcatcgatccgagacatatgtaagcaaaggccttac
cagcatggcgcagatatgctggccgccgtttcccaggtgttgaatgaatgcaccaaacct
gatcaagctactccggcagccttggtgctccagggtcttcacgcgctctgccaagcggag
gtcgtttgcattcgctccgcttggaacgcgctgtccccaaagctcagctgcgacacgaga
cctctcatcttgaagaccctcagcgacctgttttctctcgttccttccttaacagtcaat
acagccgaatatgagaattttaaagttcaagtcctcagcttcctctggacccacactcaa
aacaaggaccccgttgtagcaaatgctgcgtataaatctctgtcgcgcttcagtgcggga
gagcacaccattctgcatctgcctgaggagataagaccagaaatccctactcccaatgag
ctggatgaagacgaagatgatgagggtgatgagaaggatctggatctttccattcctggc
tcttgctatctcaaactgttgtcccttaccgctcctttggttttaccagctttggaggaa
ttttttacatctcttgtgaagcaagaaatggtgaatatgccccgaggggtgtatcactct
gcattaaaaggaggtgtccggtccgaccaaggaaaaactgtagcaggaatccccaatttt
atattgaaaatgtatgaaaccaataagcaaccaggtttgaaacctggccttgcaggtggt
atgttattttgttacgatgtttcaacctatcagagtaaagatggcaaaccattgaatcga
ctgatggccagtagagggcgaagtttcaagcagacctctctcgctctagtgcatgaggtt
cacatccagctttccgagtggcaccgggcgatctttctgccacaggcctggcttgcgtat
atgagtcgagcttatcatgccattttacagggcaggacaggagagctggacttgcaactg
aaacatgggaaagaaggccccgaggaggtgcagtacaagaaaggcacagcctggctctgg
gtccgagacatgttgactgaggagatcaccaaggcggcggccaaggagagcccagtggtc
aagggcaacgcgctgttagccttaagcagcctcgctgtcgtcgtatccagacacgaagcc
agcctctcctcggactcggacggggtcccggaggttcagcctaatttcctttcaatgaag
gagtgggtttccatggtgtctgatactctcctggtcattgtggatagccattaccaaccc
agaggacaacttttctcctcgttttattataaatcctattctggtgaaaacacagctagc
gcgattgcccgctccgctgctgccacggctttgtctctcctcgtgccagttttcattatt
tcttgcaaagagaaggttgaggaaatcctaaacatgctgactgccaggttacctgggaaa
ccaagagccgatgagtctcaagccgtgcaaatccacatgggccttgctttggggatgttt
ctctctcgcttgtgtgaggagaaactcagtgatatctctggccaacagatgaaccttctt
ctgatgaagtctctggatgccctggaaaattgctgctttgatcctagtcttgaatataac
acgggctgtatattgggagttggacttgttctgtccctcatgagccacagcagccaaacg
gagtctcgagttcacgtggcggcatcacttcggaagctctcgacatacctggacgacagt
gggagccaaagcagaacatttcaggaggtcctggcctataccctcagctgtgtatgtacc
tcagcgttcagtaccgggattgttgaggctgaggaggcagaggaggtcatgaacaagctt
cggatgttggtggagaacaaccagcagacttcaggttttgccctggccttgggaaaccta
gttcatggtttgtctgtgtgcggacacggaaaagctgaggacttgggccacagactgctc
cccgcctggatcagaattgttctggcacagggcactcctacgatgctttgtttggccgcg
cttcacggcatggtggcgttggtaggctctgaaggggatgtaatccagctgaagtctgaa
gccatccagtcctctgattttcaagccagacttaatgaagtcatcaaaactgtaactcag
gtcatcagtgtgtctggggtgattggtcttcaatcaaatgctctttggcttctaggacat
cttcatctgtctactctgtcctcaagtcagagcagaacctctgttcctactgactatagc
tatttgcctgagagcagttttatgagagcggccattggcttcttcgttacaggaggaaaa
aaaggtcccgaatctgtgcctccttcccttctcaaagtcgtgatgaaacccatcgcagct
gtcggagaaagctaccagtatcctcctgtgaactgggctgcgctcctctctccacttatg
aggctcaactttggcgaagagatacagcaactgtgccttgagatcatggtgacacaggtg
cagtcatcccagaatgcagctgcgctcttgggactgtgggtgacgcccccactggtccac
gctctgagtttgaatatcaagaaatacctcctggtgtctacgcctctgtggataaaacat
gtctccgacgaacagatcctgggctttgttgagaatgtcatggtggcagtttttaaagca
gcttctccccttctccatcctgagttatgcggaagtgccttacaggggctgagtcaggcc
atgaagctgcccagccctacccaccacctctggagtctgctctctgaagctactggaaaa
atttttgacctcctgccaaataagattcggagacatgatctagagctgtatgtcggtgta
gcaagatgcctctcagaaatgacggatgatgaggctagtcgggttgctcagctcactgag
agcaatctagaaaaagctgcctttgtcagactgtacttggtctctcaaggacgattcccc
ttgatgggcttgatggatgtcctcagcgttgccgttcagcacccgggaaaagacacgctg
gcttggatggtactgcacggcctctaccaggcgcgggttgtgagccatgccaacacaggt
gtgttgaagagaatggaatggctcttggaactgatgggttatatcaggaatattgcgtac
cagtcaacatctgttcagaacgtgactctcgatgaggctttggacttcttgttgctgctg
tttgcagccgcagtggtgacatgggcagaccacgccgcacctctccttcttggcctcagc
gccagctggttgccatggcatcgggaaggtggcccagcggggtcagcttcaagcttcctt
ggcaggagtccagtgcacagggtcactctgcaggaggctctcactctgcttcccggtagc
atgccccttctgctgcaaaaagagccatggaaggaacagacccagaagttcattgactgg
ctctttgtcatcatggaaagccctaaagaaggcctctcggcaaaatccagggatctttta
aaagccaccctgctgtccttgagagttctccccgagtttaagaagaaagctgtgtggacc
agagcgtacggttggtga
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integrated database retrieval system