Ursus americanus (American black bear): 123781963
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Entry
123781963 CDS
T07931
Symbol
PRPF40A
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
uar
Ursus americanus (American black bear)
Pathway
uar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
uar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123781963 (PRPF40A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
uar03041
]
123781963 (PRPF40A)
Spliceosome [BR:
uar03041
]
Complex A
U1 snRNP components
U1 related factors
123781963 (PRPF40A)
Complex B
123781963 (PRPF40A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
123781963
NCBI-ProteinID:
XP_045637722
LinkDB
All DBs
Position
Unknown
AA seq
1059 aa
AA seq
DB search
MTPVQQKAKEAEKCAERGERRPKATQTEAEGESPQSCVSAAHSDWTVGKPVSLLAPLIPP
RSAGQPLTFGPSGRQPLRSLLVGMCSGSGRRRSSLSPTMRPGTGAERGGLMVSEMESHPP
SRGPGDGERRLSGSSLCSSSWVSADGFLRRRPSMGHPGMHYAPMGMHPMGQRANMPPVPH
GMMPQMMPPMGGPPMGQMPGMMSSVMPGMMMSHMSQASMQPALPPGVNNMDVAAGTTSGA
KSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNS
QTKESRWAKPKELEDLEGYQNTIVAGSLITKSNLHAMIKAEESSKQEECTTTSTAPVPTT
EIPTTMSTMAAAEAAAAVVAAAAAAAAAAAAANASASTSASNTVGGTGPVVPEPEVTSIV
ATVVDNENTVTISTEEQAQLTSTPAVQEQSMEVSSNTGEETAKQETVADFTPKKEEEESQ
PAKKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFN
AYKVQTEKEEKEEARSKYKEAKESFQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISER
DRLEIYEDVLFFLSKKEKEQAKQLRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPT
FAEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKSLLRERRRQRKNRESFQIFLDELH
EHGQLHSMSSWMELYPTISSDIRFTNMLGQPVFSLGSTALDLFKFYVEDLKARYHDEKKI
IKDILKDKGFVVEVNTTFEDFVAIISSTKRSTTLDAGNIKLAFNSLLEKAEAREREREKE
EARKMKRKESAFKSMLKQATPPIELDAVWEDIRERFVKEPAFEDITLESERKRIFKDFMH
VLEHECQHHHSKNKKHSKKSKKHHRKRSRSRSGSDSDDDDSHSKKKRQRSESRSASEHSS
SAESERSYKKSKKHKKKSKKRRHKSDSPESDAEREKDKKEKDRESEKDRTRQRSESKHKS
PKKKTGKDSGNWDTSGSELSEGELEKRRRTLLEQLDDDQ
NT seq
3180 nt
NT seq
+upstream
nt +downstream
nt
atgacccccgttcagcagaaagcaaaggaagcagagaagtgcgcagaaagaggcgagcgg
aggccaaaggcgacgcagactgaggctgagggcgaatcgccgcagagctgcgtgtcggca
gcgcactctgattggacagtggggaagcctgtcagcttattggccccgctgatcccgccc
cgtagcgcagggcagcctttaacctttggcccgagcgggcgtcagccactcagatcgctt
cttgttggtatgtgtagcggcagtggccgccggcggagcagtctgagcccgacgatgagg
ccggggacgggagcggagcgcggaggcctcatggtgagtgaaatggagagccatcctccc
tcgcggggtcccggggacggggagcggagattgtccggctcaagcctctgctccagctct
tgggtctctgctgacggcttcctgaggagacggccctcgatggggcaccccggcatgcat
tatgccccaatgggaatgcaccctatgggtcagagagccaatatgcctcctgtacctcat
ggaatgatgccgcaaatgatgccccctatgggagggccgccaatgggacaaatgcctgga
atgatgtcttccgtaatgcctggaatgatgatgtctcatatgtctcaggcttccatgcag
cctgccttaccgccaggagtaaataatatggacgtagcagcaggtacaacatctggtgca
aaatcaatgtggactgagcataagtcacctgatggaaggacgtactactacaatactgaa
acaaaacagtctacttgggagaaaccggatgatctgaaaacacctgctgagcaactttta
tctaaatgtccctggaaggaatacaaatctgactctggaaagccttactattataattct
caaacaaaagaatcccgctgggccaaacctaaagaacttgaggatcttgaaggataccag
aataccattgttgctggaagtcttattacaaaatcaaacctgcatgcaatgatcaaagct
gaagaaagcagtaagcaagaagagtgcaccacaacatcaacagccccggttcctacaaca
gaaattccgaccaccatgagcaccatggctgctgcggaagctgccgccgctgtcgttgct
gctgcagccgctgctgctgccgctgccgccgcagccaatgccagtgcttccacctctgct
tcgaatactgtcggtggaactggtccagttgttcctgagcctgaagttacttcgattgtt
gctactgttgtagataacgagaatacagtgacaatttcaactgaagaacaagcacaactt
actagtactcctgctgttcaggaacagagtatggaagtatccagtaatactggagaagaa
acagctaagcaggaaactgtagctgattttactcccaaaaaagaagaggaggaaagccaa
ccagcaaagaaaacctatacttggaatacaaaggaagaggcaaagcaagcgtttaaagaa
ttattgaaagaaaagcgggtaccatctaatgcttcatgggaacaagctatgaaaatgatc
attaatgatccacgatacagtgctttagcaaagttgagtgaaaaaaagcaagcctttaat
gcttacaaagtacagacagagaaagaagaaaaggaagaagcaagatcgaaatacaaagag
gcaaaggaatcctttcagcgttttcttgaaaatcatgagaaaatgacttccacaaccaga
tacaaaaaagcagagcaaatgtttggagagatggaagtctggaatgcgatatcggaacgt
gatcgtcttgaaatctatgaagatgttttattctttctttcaaaaaaagaaaaggagcaa
gcaaagcagttacgaaagagaaattgggaagccttaaaaaacatacttgacaacatggct
aatgtaacatactctactacctggtctgaagctcagcagtatctgatggataatccaact
tttgcagaagatgaggaattacagaacatggataaagaagatgcattaatttgctttgaa
gaacacatccgagctttagaaaaggaagaagaagaagaaaaacagaagagtttgctgaga
gaaaggagacggcagcgtaaaaacagagaatcttttcagatatttttagatgaactgcat
gaacatggacaactgcattctatgtcatcttggatggaattgtatccaacaattagttcc
gacattagatttactaatatgcttggtcaaccggttttttcattaggatcaactgcactt
gaccttttcaagttttatgttgaggatcttaaagcacgttatcatgatgagaagaaaata
ataaaagacattctaaaggataaaggatttgtagttgaagtaaatactaccttcgaagac
tttgtggccataatcagttcaactaaaaggtcaaccacattagatgccggaaatattaag
ttggctttcaacagtttactagaaaaggcagaagcccgtgaacgcgaacgagaaaaagag
gaggctcggaaaatgaaacgaaaagaatctgcatttaagagtatgttgaaacaagctact
cctccaatagaattggatgctgtctgggaagatattcgggagagatttgtaaaagagcca
gcatttgaggacataactctagagtctgaaagaaaacgaatatttaaagattttatgcat
gtgcttgagcatgaatgtcaacatcatcattcaaagaacaagaaacattctaaaaaatct
aaaaaacatcacaggaaacgttcccgttctagatcggggtcggattcagatgatgatgac
agccattcaaagaaaaaaagacagcgatcagagtctcggtctgcctcagaacattcttct
agtgctgagtctgagagaagttataagaagtcaaaaaaacataagaagaaaagcaagaag
aggagacataaatctgactctccagagtcagatgctgagcgagagaaggataaaaaagaa
aaagaccgagaaagtgaaaaagacagaactagacaaagatcagaatcaaaacacaaatca
cctaagaaaaagactggaaaggattctgggaattgggatacttctggcagtgaactgagt
gaaggggaattggaaaagcgcagaaggacccttttggagcaactggatgatgatcaataa
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