Ursus americanus (American black bear): 123788388
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Entry
123788388 CDS
T07931
Symbol
TOPBP1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1 isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
uar
Ursus americanus (American black bear)
Pathway
uar03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
uar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
123788388 (TOPBP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
uar03032
]
123788388 (TOPBP1)
03400 DNA repair and recombination proteins [BR:
uar03400
]
123788388 (TOPBP1)
DNA replication proteins [BR:
uar03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
123788388 (TOPBP1)
DNA repair and recombination proteins [BR:
uar03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
123788388 (TOPBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
123788388
NCBI-ProteinID:
XP_045647741
LinkDB
All DBs
Position
Unknown
AA seq
1513 aa
AA seq
DB search
MSRNDKEPFLVKFLKSSENSECFFKALESIKEFQSEEYLQIITEEEALKIKENDKSLYIC
DPFSGIVFDHLKKLGCRIVGPQVVIFCMHHQQCVPRAEHPVYNMVMSDVTVSCTSLEKDK
REEVHKYVQMMGGRVYRDLNVSVTHLIAGEVGSKKYLVAANLKKPILLPSWIKTLWEKSQ
EKKIARYTDVNMEDFKCPIFLGCIICVTGLCSLDRKAVQRLTIKHGGQYMGQLKMNECTH
LIVQEPKGQKYECAKRWNVHCVTTQWFFDSVDKGFCQDESIYKTEPRPETKTVPDTSTPT
GQINTVDSRTLSDVSHISNINASCINESMCNSVLNSKVEPTLENLENLDVSAFQAPEDLL
DGCRIYLCGFSGRKLDKLRRLINSGGGVRFNQLNEDVTHVIVGDYDDELKQFWDKSAHRP
HVVGAKWLLECFSKGYMLPEEPYIHANYQPVEIPVSDQPESKTALLKKNTNISKKDLAPD
EKHEQADEDLLSQYVNNNPTVVEAVKSEVEPFNDSTRISLQEENQSSVTRCLPDASTITE
EGLFSQKSFLVLGFSNENESNIANIIRENAGKIVSLQSRIVADYAVVPLLGCEVEATVGE
VVTNTWLVTCIDYQTLIDPKSNPLFMPVPVMAGMTPLEDCVISFSQCAGAEKDSLTFLAN
RLGASVQEFFVRKSNAKKGMFASTHLVLKEPGGSKYDAAKKWNLPAVTISWLLETARMGK
RANESHFLIEKSTKEEQSLETEITNRVNLNPDTPEHPVAHLETHRKTAVTPLDMNHFQSK
AFHAVISQHTRQVSVSPPVGQPLQKEPSLHLDTPSKFLSKDKLFKPSFDVKDALAALETP
GGPSQQKRKLSTPLSEVIVRNLKLALANSSRNAVALSASPQLKDAQSEKEEAPKPLDKVV
VCVSKKLSKKQGELNGIAASLGADYRWSFDETVTHFIYQGRPNDTNREYKSVKERGVHIV
SEHWLLECAQEYKHLPESLYPHTYNPKMSLDISTVQDGRLSNSRLLSADSTTKDDEPDHL
PVEENDIDNMTTNNKESATSNGDGRNDSKGALTQTLEMRENFQKQLQEIMSATSIVKPQG
QRASLSRSGCNSASSTPDSTRSARSGRSRVLEALRQSRQTVPDVNTEPSQNEQIIWDDPT
AREERARLASNLQWPSCPTQYSELQGDIKKLEDSPSQEPLRDSEIAERAVCDPGNMCGTE
APKHPISEELETPVKDSHLIPTPQAPSIAFPLANPPVAPHPREKIITIEETHEDLKKQYI
FQLSSLNPQERIDYCHLIEKLGGLVIEKQCFDPNCTHIVVGHPLRNEKYLASVAAGKWVL
HRSYLEACRTAGHFVPEEDYEWGSSSILDVLTGINVQQRRLALAAMRWRKKLQQRQESGI
VEGAFSGWKVILYVDQSREAGFKRLLQSGGAKVLPGHSVPLFKEATHLFSDFNKLKPDDS
GVNIAEAAAQNVYCLKTEYIADYLMQESPPRVENYCLPEAISFLPNNKEPGPGLSQKRKA
PTEKNKMKRPRVN
NT seq
4542 nt
NT seq
+upstream
nt +downstream
nt
atgtccagaaatgacaaagagccgtttcttgtgaagtttttaaagtcttcagagaattcc
gaatgtttttttaaagctcttgagtcaataaaagagttccaatcagaagaatatcttcag
attattacagaagaagaggcattgaagataaaggaaaatgataagtcactttacatctgt
gacccttttagtggcattgtctttgatcacctcaaaaagcttggctgcagaattgttgga
cctcaagtagtcatattttgtatgcaccaccagcagtgcgtcccaagagctgaacatcca
gtttataatatggttatgtctgatgtaactgtatcttgtacaagcctggaaaaagacaaa
agggaagaagttcataaatatgtacaaatgatgggtggtcgtgtatatagagatcttaat
gtatcagtaactcaccttattgcaggagaagttggcagcaaaaaatatttagttgctgca
aacctaaagaaacctattttgcttccttcttggattaaaacactttgggaaaagtcacaa
gagaaaaaaatagctaggtatactgatgtaaacatggaagacttcaagtgtcctattttt
cttggttgcataatctgtgtgactggcttgtgtagcttagacaggaaggcagttcagcga
ctcacaattaagcatggaggtcaatacatgggacaactgaaaatgaatgaatgtacacac
ctcattgtgcaagaaccaaaaggtcaaaaatacgaatgtgccaagagatggaatgtacac
tgtgtgaccacacagtggttttttgacagtgttgacaaaggtttttgtcaggatgaatcc
atctacaagacagagcctagaccagaaacaaagactgtgcctgatacttcaactcctact
ggccagatcaacacagttgatagtcgtactctttcagatgtcagccatatttccaacatc
aatgcaagttgcataaatgaatcaatgtgtaattcagttcttaatagcaaagtggagcct
acacttgaaaatctagaaaatctggatgtcagtgcatttcaagcacctgaagatttattg
gatggttgtcggatctatctttgcggttttagtggcagaaagctagataaactgagaagg
cttattaacagtggaggtggagttcgttttaatcagctcaatgaagatgtaactcatgtt
attgtgggagattatgatgatgaattgaagcagttttgggataaatcggcccacaggcct
catgtagtgggagcaaaatggttgctagagtgttttagtaaaggttatatgcttcctgaa
gagccatatattcatgctaactaccagccagtggaaattccagtttcagatcaacctgag
agtaaaacagcccttttaaaaaagaacaccaacatctctaagaaagacttggctcctgat
gaaaagcatgaacaagctgatgaagatctgctctctcagtatgtaaataataacccaaca
gtagttgaagctgtgaagtctgaagttgagccctttaatgactccactcgtatttctcta
caagaagaaaaccagtcttctgtcactcgttgcctccctgatgcttctactattactgaa
gaaggtttatttagccaaaagagtttccttgttttggggtttagtaatgaaaatgaatct
aatattgcaaatattataagagaaaacgctggaaaaatcgtgtcccttcagagcagaatt
gttgctgattatgccgtggttcctctgctcgggtgtgaagtagaagcaacagtgggagaa
gttgtcacaaatacgtggctggtaacttgtatagactatcagactttaattgatccaaag
tcaaatcctctcttcatgccagtcccagtaatggcaggaatgactccgttagaggattgt
gttatttcattcagccagtgtgcaggagcagaaaaagattcgttgacattcttagcaaat
cgccttggagcaagcgttcaagaattctttgttcgcaaatccaatgcaaagaaaggcatg
tttgccagtacacatcttgtattgaaagaaccaggtggttctaaatatgatgctgccaag
aagtggaatttaccagcggtcaccatatcttggctgttggagactgctagaatgggaaag
agagcaaatgaaagccattttctgattgaaaagtcaactaaagaagagcaaagtttggaa
actgaaataaccaacagggtgaatctaaatccagatactccggagcatcctgttgcacac
ctggaaactcacaggaaaacagccgttacacctttagatatgaaccatttccagagtaaa
gctttccatgctgtgatctcacaacacaccagacaggtttccgtttccccaccagtggga
cagccacttcagaaggagccctccttacatctggatacaccatcaaaatttctgtccaag
gacaaactcttcaagccttcctttgatgtgaaggatgcgcttgcagccttggaaactcca
ggaggtcctagccagcagaaaagaaaactgagtacgccgctttcagaagtcattgtcaga
aacttgaaacttgctttggcaaatagctctcgaaatgctgttgctctgtctgccagccct
cagctgaaggatgcccaatcggagaaggaagaagccccaaagccacttgacaaggtagtg
gtatgtgtgagtaagaaactcagtaagaagcagggtgaactgaatggaattgcagcctct
ctaggagcagattacagatggagttttgatgaaacagtgactcatttcatttatcaaggc
cgaccgaatgacactaaccgggagtacaagtctgtcaaagaaaggggagtacacatcgtt
tcagagcactggcttttagaatgtgctcaggagtataaacatcttcctgaatctctttat
ccacatacttacaatcccaaaatgagcttggatatcagtacagtgcaagacggcagactc
tctaatagtcgactcctgtcagcggattcaacaacaaaggatgatgagccagatcatttg
cccgtagaagaaaacgatatagacaatatgaccaccaataataaagaatcagcaacatca
aatggagatggaaggaatgactctaaaggagctctgacacaaaccttggagatgagagag
aactttcaaaagcagctgcaggagataatgtctgcaacgtcaatagtgaaaccccaaggg
cagagggcttccctttcaagaagtggttgtaacagtgcttcttcaacccctgatagcact
cgctctgcccgcagtgggcgaagtagagtcctggaggcactgaggcagtcacgtcaaaca
gtacctgatgtcaacacagagccctcccagaatgaacagatcatttgggatgacccgaca
gccagggaggagagagcaaggcttgccagcaatctgcagtggcctagttgtcccacacag
tattctgagcttcagggtgacattaaaaaattggaggattctccttcccaggagccttta
cgtgattcagaaattgctgaacgggctgtctgtgatcctggaaacatgtgtgggactgaa
gccccaaaacacccgatctctgaagaactggaaacaccggtaaaagacagccacctgatc
cctacacctcaagcccccagtattgccttccccctagccaacccaccagtggctccacac
cctagagaaaagattataacaatagaggaaacacatgaagacttaaaaaaacagtatata
tttcagttgtcatctctgaatcctcaagaacgtattgattattgtcatctgattgaaaaa
ctaggtggattagtaatagagaaacagtgctttgatcccaattgtacacacattgtggtg
ggacatccacttcgaaatgagaagtatttagcctcagtggcagctgggaaatgggtgctt
catcgctcctacctggaagcatgccggactgctggacacttcgtgccggaagaagactat
gaatggggaagtagttcaatactcgatgttttgactggaatcaatgtacagcaacgaaga
ctagcacttgcagcaatgagatggaggaagaaactccagcaaagacaagaatcgggcatc
gttgagggggcatttagtgggtggaaggttatcttatatgttgaccaatcccgagaagca
ggatttaaacgccttcttcagtcaggaggagcaaaggtgctacctggtcattctgtgcct
ttatttaaagaagccacacacctcttttctgacttcaataaactgaaaccagatgactca
ggagttaatatagcagaagctgccgcccaaaatgtgtactgcttgaaaacagagtacatt
gctgactacctgatgcaggaatcccctcctcgagtagaaaattactgtctaccagaagcg
atttcatttcttccaaataataaggaacctgggcctggattatcacagaagaggaaagct
cctacagagaaaaataaaatgaaacgacctagagtaaactaa
DBGET
integrated database retrieval system
