KEGG   Ursus americanus (American black bear): 123790367
Entry
123790367         CDS       T07931                                 
Symbol
RAD50
Name
(RefSeq) DNA repair protein RAD50
  KO
K10866  DNA repair protein RAD50 [EC:3.6.-.-]
Organism
uar  Ursus americanus (American black bear)
Pathway
uar03440  Homologous recombination
uar03450  Non-homologous end-joining
uar04218  Cellular senescence
Brite
KEGG Orthology (KO) [BR:uar00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    123790367 (RAD50)
   03450 Non-homologous end-joining
    123790367 (RAD50)
 09140 Cellular Processes
  09143 Cell growth and death
   04218 Cellular senescence
    123790367 (RAD50)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:uar03032]
    123790367 (RAD50)
   03400 DNA repair and recombination proteins [BR:uar03400]
    123790367 (RAD50)
DNA replication proteins [BR:uar03032]
 Eukaryotic type
  DNA Replication Termination Factors
   MRN complex
    123790367 (RAD50)
DNA repair and recombination proteins [BR:uar03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    MRN(MRX) complex
     123790367 (RAD50)
    BRCA1-C complex
     123790367 (RAD50)
   NHEJ (non-homologous end-joining)
    MRX complex
     123790367 (RAD50)
SSDB
Motif
Pfam: AAA_23 Rad50_zn_hook AAA_21 SbcC_Walker_B SMC_N AAA_15 DUF2703 AAA_29
Other DBs
NCBI-GeneID: 123790367
NCBI-ProteinID: XP_045650689
LinkDB
Position
Unknown
AA seq 1312 aa
MSRIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECLKYICTGDFPPG
TKGNTFVHDPKVAQETDVRAQIRLQFRDVNGELTAVQRSMVCTQKSKKTEFKTLEGVITR
TKHGEKVSLSSKCAEIDREMISSLGVSKSVLNNVIFCHQEESNWPLSEGKALKQKFDEIF
SATRYIKALETLRQVRQTQGQKVKECQTELKYLKQNKEKACEIRDQITNKEAQLTSSKEI
VKSYENELDPLKNRLKEIEQNLSKIMRLDNEIKALDSRKKQMEKDNSELEQKMEKVFQGT
DEQLNDLYHNHQRTVREKERRLVDCQREVEKLNKESRLLNQEKSELLVEQGRLQLQADRH
QEHIRARDSLIQSLATQLELDGFERGPFSERHIKNFHKLVRERQEREAEIASQLMNDFAE
KETLKQKQIDEIRDKKIGLGRIIELKSEIQSKKQNELRNVKYELQQLEGSSDRILELDQE
LSKAERELSKAEKNSNVEALKTEVISLQNEKADLDRTLRKLDQEMEQLNHHTTTRTQMEM
LTKDKADKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKE
LASAEQNKNHINNELKRKEEQLSSYEDKLFDVCGSQDFENDFDRLKEEIEKSSKQRAMLA
GATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEVISDLQSKLRLAPDKLKSTESELK
KKEKRRDEMLGLVPVRQSIIDLKEKEIPELRNKLQNVNRDIQRLKNDIEEQETLLGTIMP
EEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGLDLDRTVQQVNQEKQEKQHKLD
TVSSKMELNRKLIQDQQEQIQHLKSTTNELKSEKLQISTNLQRRQQLEEQTVELSTEVQS
LFREIKDAKEQLSPLETTLEKFQQEKEELINKKNKSNKIAQDKMNDIKEKVKNIHGYMKD
IENYIQDGKDDYKKQKETELNKVMAQLSECEKQKENINTEMGIMRQDIDTQKIQERWLQD
NLTLRKRNEELKEVEEERKHHLKEMGQMQVLQMKNEHQKLEEKIDNIKRNHSLAIGRQNG
YEEEIIHFKRELREPQFRDAEEKYREMMIVMRTTELVNKDLDIYYKTLDQAIMKFHSMKM
EEINKIIRDLWRSTYRGQDIEYIEIRSDADENVSASDKRRNYNYRVVMLKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSQQR
NFQLLVITHDEDFVELLGRSEYVEKFYRIKKNIDQCSEIVKCSVSSLGSYVH
NT seq 3939 nt   +upstreamnt  +downstreamnt
atgtcccggatcgaaaagatgagcattttgggcgtgcggagctttggaatagaggacaaa
gataagcaaattatcacttttttcagcccccttacaattttggttggacctaatggggcg
gggaagacgaccatcattgaatgtctgaaatatatttgtactggagattttcctcctgga
accaaaggaaatacatttgttcatgatcccaaggttgctcaagaaacagatgttagagcc
cagatccgcctgcagtttcgtgatgtcaatggagaacttacagctgtacagagatctatg
gtgtgtactcagaaaagcaaaaagacagaatttaaaaccctggaaggagtcattactaga
acaaagcatggtgagaaggtcagtctcagctctaagtgtgcagaaattgaccgagagatg
ataagttctcttggggtttccaagtctgtgctgaataatgtcattttttgtcaccaagaa
gagtcgaattggcctttaagtgaaggaaaggctctgaagcaaaaatttgatgagattttt
tcagcaacaaggtacattaaagccttggaaacacttcggcaggtacgtcagacacaaggt
cagaaagtaaaagaatgtcaaacggaactaaaatatttgaagcaaaataaggaaaaagct
tgtgagatacgtgaccagattactaataaggaagcccagttaacatcatcaaaggaaatt
gtcaaatcctatgagaacgaacttgatccattgaagaatcgtctaaaagaaattgaacaa
aatctctctaaaataatgagactcgacaatgaaattaaagccttagatagccggaagaag
caaatggagaaagataatagtgaactggaacagaaaatggaaaaggtttttcaagggact
gatgagcaactaaatgatttatatcacaatcaccagagaacagtaagggagaaagaaagg
agactggtagactgtcaacgtgaagtggaaaagttaaataaagaatcacggcttctcaat
caggaaaaatcagaactgcttgttgagcagggtcgtctgcaactacaagcagatcgccat
caagaacatatccgagctagagattcattaattcagtctttggcaacacagctagaattg
gatggctttgagcgtggaccattcagtgaaagacatattaaaaattttcacaaacttgtg
agagagaggcaagaaagggaagcagaaattgccagccaactgatgaatgactttgcagaa
aaagagactctgaaacaaaaacagatagatgagataagagataagaaaattggactggga
agaataattgagctaaaatctgaaatccaaagtaagaagcagaatgagctgagaaatgtg
aagtatgaattacagcagttggaaggatcttcagaccggattcttgaactggaccaggag
ctctcaaaagctgaacgtgagctgagcaaggctgagaaaaacagcaatgtagaagctcta
aaaacagaagtaataagccttcaaaatgagaaggcagacctagacaggaccctgcgtaaa
ttggaccaggagatggaacagttaaaccatcatacaacaacacgcacccagatggagatg
ctgaccaaagacaaagccgacaaagatgaacaaatcagaaaaataaaatctagacacagt
gatgaattaacttcattgttaggatattttcccaacaaaaaacagctcgaagactggctt
catagtaaatcaaaagaaattaatcagaccagggacagacttgccaaattgaacaaagaa
ctagcttcagctgagcaaaataaaaatcatataaataatgaactaaaaaggaaagaagag
cagttgtccagttatgaagacaagctgtttgatgtttgtggtagccaggattttgaaaat
gactttgacaggcttaaagaagaaattgaaaaatcctcaaaacagcgagccatgctggct
ggagccacagcagtttactcccaattcattactcagctaacagatgaaaaccagtcatgt
tgccctgtctgtcagagggtttttcagacagaagctgaattacaggaagtcatcagtgat
ttgcagtctaagctgcggcttgctccagataaactgaaatcaacagaatcagaactaaag
aaaaaagaaaagcggcgtgacgaaatgctgggacttgtccctgtgaggcaaagcataatt
gatttgaaggagaaggaaataccagaattaagaaacaaactgcagaatgtcaatagagac
atacagcgcttaaagaatgacatagaggaacaggaaacgctcttgggcaccataatgcct
gaagaagaaagtgctaaagtctgcctgacagatgttacaattatggagaggttccagatg
gaactcaaagatgttgaaagaaaaattgcacagcaagcagctaagctgcaaggactagac
ttggatagaactgttcaacaagtaaaccaggaaaaacaagagaaacaacacaaattagat
acagtttccagtaagatggaattgaatcgcaagcttatacaggaccagcaggaacagatt
caacacctaaaaagtacaacaaatgaacttaaatcagagaaacttcagatatctactaat
ttacaacgtcgtcagcaactagaggagcagactgtggaattatccactgaagttcagtcc
ttattcagagagataaaggatgctaaagagcagttaagccccttggaaacaacattggaa
aagttccagcaggaaaaagaagaattaatcaacaagaaaaataaaagcaacaaaatagcc
caggataaaatgaatgatatcaaagaaaaggttaaaaatattcatggttatatgaaagac
attgagaattatattcaagatggaaaagatgactataagaagcaaaaagaaactgagctt
aataaagtaatggctcaactaagtgaatgtgagaaacagaaagaaaatataaatacagaa
atgggaatcatgagacaagatattgacacacagaagatacaagagagatggctacaggat
aaccttactttaagaaaaagaaatgaggaactaaaagaagttgaagaagaaagaaaacat
catttgaaggaaatgggtcaaatgcaggttttacaaatgaagaatgaacatcagaagttg
gaagaaaaaatagacaatataaaaagaaatcacagtttggcaatagggcgacagaacggt
tatgaggaagaaattattcattttaagagagaacttcgagaacctcaatttcgggatgcg
gaggaaaagtacagagaaatgatgattgtgatgagaacaacagagcttgtgaacaaggat
ctggacatttattataagacccttgatcaagcaatcatgaaatttcacagtatgaaaatg
gaagaaatcaacaaaattattcgtgacctttggcgaagtacctatcgtggacaagatatt
gaatacatagaaattcggtctgatgccgatgaaaatgtatcagcctctgataaaaggcgg
aattataactaccgcgtggtgatgctaaagggagacacagccttggacatgcgagggcga
tgcagtgctggacaaaaggtactggcctccctcatcattcgcctggccttggccgagaca
ttctgcttgaactgtggcatccttgccttggatgagccaaccacgaatcttgaccgagaa
aacatcgagtctcttgcacacgctctcgtcgagataatcaagagtcgctcacagcagcgt
aacttccagcttctggtcatcacgcacgatgaagattttgtggagctcttaggccgttct
gaatatgtggagaaattctacaggattaagaagaacattgatcagtgctcagagattgtg
aaatgtagtgttagctccctgggttcttatgttcattaa

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