Ursus americanus (American black bear): 123790460
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Entry
123790460 CDS
T07931
Symbol
YTHDC2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
uar
Ursus americanus (American black bear)
Brite
KEGG Orthology (KO) [BR:
uar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
uar03041
]
123790460 (YTHDC2)
Enzymes [BR:
uar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123790460 (YTHDC2)
Spliceosome [BR:
uar03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
123790460 (YTHDC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
OB_NTP_bind
HA2_C
Helicase_C
R3H
DEAD
HA2_N
Ank_2
AAA_19
nSTAND3
AAA_22
Ank
ATPase
PhoH
AAA_7
AAA_16
UvrD-helicase
AAA_29
T2SSE
ABC_tran
SRP54
AAA_23
Motif
Other DBs
NCBI-GeneID:
123790460
NCBI-ProteinID:
XP_045650865
LinkDB
All DBs
Position
Unknown
AA seq
1430 aa
AA seq
DB search
MSRPSSVSPRPPAPGGGGGGGPAQCGPGGGGRAKGLKDIRIDEEVKIAVNIALERFRYGD
QREMEFPSSLTSTERAFIHRLSQSLGLVSKSKGKGANRYLTVKKKDGSETAHAMMTCNLT
HNTKHAVRSLIQRFPVTNKERTELLPKTERGNVFAVEAENREMSKTSGRLNNGIPQIPVK
RGESEFDSFRQSLPVFEKQEEIVKIIKENKVVLIVGETGSGKTTQIPQFLLDDCFKNGIP
CRIFCTQPRRLAAIAVAERVAAERRERIGQTIGYQIRLESRVSPKTLLTFCTNGVLLRTL
MAGDSTLSTVTHVIVDEVHERDRFSDFLLTKLRDLLQKHPTLKLILSSAALDVNLFIRYF
GSCPVIYIQGRPFEVKEMFLEDILRTTGYTNKEMLKYKKEKQREEKQQTTLTEWYSAQEN
TFKPESQRQRTVPNVTEEYDLLDDGGDAVFSQLTEKDVNCLEPWLIKEMDACLSDIWLHK
DVDAFAQVFHLILTENVSVDYRHSETSATALMVAAGRGFSSQVEQLISMGANVHSKASNG
WMALDWAKHFGQTEIVDLLESYSASLEFGNLDESSLVHTNGSDLSAEDRELLKAYHHSFD
DEKVDLDLIMHLLYNICHGCDAGAILIFLPGYDEIVGLRDRILFDDKRFADNTHRYQVFM
LHSNMQTSDQKKVLKNPPAGVRKIILSTNIAETSITVNDVVFVIDSGKVKEKSFDALNFV
TMLKMVWISKASAIQRKGRAGRCRPGICFRLFSRLRFQNMLEFQTPELLRMPLQELCLHT
KLLAPVNCPIADFLMKAPEPPPALIVRNAVQMLKTIDAMDTWEDLTELGYHLADLPVEPH
LGKMVLCAVVLKCLDPILTIACTLAYRDPFVLPTQASQKRAAMLCRKRFTAGTFSDHMAL
LRAFQAWQKARSDGWERAFCEKNFLSQATMEIIIGMRTQLLGQLRASGFVRARGGGDIRD
VNTNSENWAVVKAALVAGMYPNLVHVDRENVVLTGPKEKKVRFHPTSVLSQPQYKKIPPA
NGQAAAIQALPTDWLIYDEMTRAHRIANIRCCSAVTPVTVLVFCGPARLASNALQEPSSF
RADGIPNDSSDSEMEDRTTANLAALKLDEWLNFKLEPEAASLLLQLRHKWHSLFLRRMRA
PSKPWSQVDEATIRAIIAVLSTEEQSAGLQQPSGIGQRPRPMSSEELPLASSWRSNNSRK
TSADTDFSDESATAERVLMKSPSPALHPPQKYKDRGILHPKRSTDDRSDQSSVKSTDSSS
YPSPCASPSPPSSGKGSKSPSPRPNMPIRYFIMKSSNLRNLEISQQKGIWSTTPSNERKL
NRAFWESSMVYLVFSVQGSGHFQGFSRMSSEIGREKSQDWGSAGLGGVFKVEWVRKESLP
FQFAHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWERLPLGDKAAAD
NT seq
4293 nt
NT seq
+upstream
nt +downstream
nt
atgtccaggccgagcagcgtctccccgcggccgcccgctcctggcggcggcggcgggggc
ggcccagctcagtgcggccctgggggcgggggccgggccaaggggctgaaggacattcgg
atagacgaggaggtgaagatcgcagtcaatatcgctctggagcgcttccgatacggggac
cagagagaaatggaatttccttcttctttgaccagcactgaaagagcctttattcatcga
ctgagtcagtctcttggtttggtctctaaaagtaaaggaaagggagcaaatagataccta
actgtgaagaagaaagatggatcagaaacagctcatgcaatgatgacctgtaatttgact
cataatacaaaacatgctgttaggagcctaattcagagatttcctgtcaccaataaagag
cgtactgaacttctgcctaaaacagaaagaggaaatgtgtttgcagttgaagctgaaaac
cgggaaatgagcaaaacaagcgggcgactcaacaatggcatacctcagattccagtgaaa
agaggagaatctgaatttgattctttcaggcagtctctgcccgtgtttgagaaacaagaa
gaaattgttaaaataattaaggaaaataaagtagttttgattgtaggagaaactgggtct
ggaaagactacgcagattcctcagttccttttagatgattgctttaaaaatggtatcccc
tgccgtatattttgtacccaaccaagacggttagcggcaatcgctgtggccgaaagagtt
gctgcagagagaagagaaaggattggtcaaacaattggatatcagatccgattagaaagc
agggtttctccaaagacacttctgacattttgcactaatggggtattgcttcgtacgttg
atggcaggagatagtacattgtcaactgtgacgcatgttattgtggacgaagtacatgaa
agggatcgatttagtgattttttacttacaaagttaagagatctgttgcaaaagcatcca
actttgaaacttattctttctagtgccgccttggatgtaaatctttttataagatatttt
ggaagttgcccagtgatatatatacagggaagaccattcgaagtaaaagaaatgttcctg
gaagacatcttaagaactactggatacacaaacaaagaaatgttaaaatacaaaaaggaa
aaacaacgagaagagaaacaacaaaccacccttacagaatggtattcagctcaagagaat
actttcaagcctgagtctcagaggcagagaactgttcccaatgtgactgaagaatatgac
ttattggatgacggcggtgatgctgtcttcagccagttgacagaaaaagatgtgaattgc
cttgaaccatggttaataaaggaaatggatgcttgtctctctgacatatggctacataaa
gatgttgatgcctttgctcaggtctttcaccttattttaactgaaaatgttagcgttgat
tacaggcatagtgaaaccagcgcaacagctctgatggttgctgcaggacgaggtttttca
agtcaagtagagcagctaattagtatgggagccaacgttcatagtaaagcatcaaatggc
tggatggctttagattgggctaaacactttggacagactgaaattgtggatcttctagaa
tcttacagtgcttcactggaatttggaaatctagatgaaagttctctggttcacacaaac
ggaagtgacctcagtgcagaagacagagagctcctgaaagcgtatcatcacagttttgat
gacgaaaaagtcgacttggatttgatcatgcaccttctgtacaatatctgccacggctgt
gacgccggtgcaatattaattttcctacctggatatgatgaaattgttggactgagggac
cgcatcctgtttgatgacaagcggtttgctgacaacacacatagataccaagtctttatg
cttcattcaaatatgcaaacatctgatcaaaagaaagtattaaaaaacccacctgctggc
gttcgaaaaataattctttccaccaacattgctgaaaccagcatcacagtcaacgatgtt
gtctttgttattgattctggtaaggtgaaagagaaatcctttgatgcactgaattttgtt
acaatgttaaaaatggtgtggatttccaaagctagtgccatacaacgaaaaggcagggca
gggagatgcagacctggaatttgtttccggctgttcagtagactccgattccagaatatg
ttggaatttcagactccagaacttttgagaatgccattacaggaactttgtttgcatact
aagctgttagcccctgtgaattgtcctattgctgatttcctaatgaaagctcctgagcct
ccaccagctttaattgtaagaaatgctgtacaaatgctgaagacaatagatgcgatggat
acgtgggaggacctcactgagctgggctatcatttggctgacttgcccgtagaaccacat
cttgggaaaatggtcctgtgcgctgttgttttaaagtgcctggaccccatcctcaccatt
gcctgcacgctagcctatcgggatccttttgtcctgcctacccaggcctctcagaaacgg
gcagctatgctttgtaggaaacgcttcactgcgggaactttcagtgaccacatggccctt
ctcagagcgttccaggcgtggcagaaagcacgaagtgatgggtgggagcgagccttttgt
gagaagaattttctttcacaagctaccatggaaataatcattggcatgagaactcagttg
cttggtcaacttagagcatcaggttttgttagagcacgaggtggtggtgacattcgagat
gttaacacaaactccgagaactgggctgttgttaaagctgcattggtggcaggcatgtac
cctaatttagtccatgtggacagagagaatgtagtattgacaggtccaaaggagaaaaaa
gttcggtttcatcccacctcagttctcagtcagcctcaatacaaaaagattcctccagcc
aatggtcaggctgctgcgattcaggcactgcccacagattggcttatctatgatgagatg
accagagcccacagaatagctaatattagatgttgctcggcagtgacccccgtcaccgtg
ttggtcttctgtggccccgcgaggttggcaagtaatgctcttcaggagccttcatcgttt
cgagcggatggtattcctaatgacagtagtgacagtgaaatggaagatagaacgactgct
aatttagcagctttgaaacttgatgagtggctcaatttcaaactagagcctgaggcggcc
agtctgctgctgcagctcaggcacaagtggcacagcttgtttttacgccggatgagagct
ccgtccaaaccctggtctcaagttgatgaagccaccataagagccatcatagctgttctc
agcactgaagaacagtccgcgggcttacagcagccatccggaatcggccagaggccgagg
cctatgtcttcagaagaacttcctctggcatcgtcttggaggtcaaataatagtaggaaa
acttcagcagatactgacttttcagacgagtctgctactgccgaaagagtactgatgaaa
tctccatctccagcactgcacccacctcagaagtacaaagatagaggaattttacatcct
aagcgaagcactgatgaccgatcagatcaatcttctgtgaaatctacagacagcagtagc
tacccaagtccttgtgctagcccttctcctccatcctcaggaaagggctcaaaatctcct
tcaccaagaccaaacatgcctattcgatacttcataatgaagagtagcaatttgagaaac
cttgaaatttctcaacagaagggtatctggtctacaacccctagtaatgagcggaagcta
aatcgagcgttttgggaaagcagcatggtttacttggtattttctgttcaaggatctgga
catttccagggattttctaggatgtcttctgagataggaagggagaagagccaggactgg
ggctcagctggactgggaggagtattcaaggtggagtgggtccggaaggaaagtcttccc
tttcagtttgctcaccacttactcaatccctggaacgacaacaagaaagtccagatcagc
agagacggccaggagttggagccccaggtcggcgagcagctgctgcagttatgggagcgc
cttccgctgggggacaaagccgcagccgactga
DBGET
integrated database retrieval system
