Ursus americanus (American black bear): 123794282
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Entry
123794282 CDS
T07931
Symbol
DHX16
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 isoform X1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
uar
Ursus americanus (American black bear)
Pathway
uar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
uar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123794282 (DHX16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
uar03041
]
123794282 (DHX16)
Enzymes [BR:
uar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123794282 (DHX16)
Spliceosome [BR:
uar03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
123794282 (DHX16)
Complex C
U4/U6.U5 tri-SnRNP related factors
123794282 (DHX16)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
AAA_30
Flavi_DEAD
SecA_DEAD
nSTAND3
Cas3-like_C_2
SRP54
GIPC1_GH2
Motif
Other DBs
NCBI-GeneID:
123794282
NCBI-ProteinID:
XP_045656512
LinkDB
All DBs
Position
Unknown
AA seq
1111 aa
AA seq
DB search
MTDGFRSPPSGKTVLGCRKASPKVLRQVLCGTQTRARPPGLQASDGPSHQRGYWRRFRAR
NGAAWVTMATPAGLERWVQDELHSVLGLSERHVAQFLIGTAQRSASAEEFVQRLRDTDTL
DLSGPARDFALRLWNKVPRKALVEKPARVAEREARALLEKNRSYKLLEDSEESSEETVGR
AGSSLQKKRKKRKHLRKKCQEEEEEEEEEISEKGKRKTGGSKQQTEKPESEDEWERSERE
RLQDLEERDAFAERVRQRDKDRTRNVLERSDKKAYEEAQKRLKMAEEDRKAMVPELRKKS
RREYLAKREREKLEDLEAELADEEFLFGDVELSRHERRELKYKRRVRDLAREYRAAGEQE
KLEATNRYHMPEETRGQPARAVDLVEEESGAPGEEQRRWEEARLGAASLKFGARDAASQE
PKYQLVLEEEETIEFVRATQLQGDEEPSGPPPPTQAQQKESIQAVRRSLPVFPFREELLA
AIADHQVLIIEGETGSGKTTQIPQYLFEEGYTKKGMKIACTQPRRVAAMSVAARVAREMG
VKLGNEVGYSIRFEDCTSERTVLRYMTDGMLLREFLSEPDLASYSVVMVDEAHERTLHTD
ILFGLIKDVARFRPELKVLVASATLDTARFSTFFDDAPVFRIPGRRFPVDIFYTKAPEAD
YLEACVVSVLQIHVTQPPGDILVFLTGQEEIEAACEMLQDRCRRLGSKIRELLVLPIYAN
LPSDMQARIFQPTPPGARKVVVATNIAETSLTIEGIIYVLDPGFCKQKSYNPRTGMESLT
VTPCSKASANQRAGRAGRVAAGKCFRLYTAWAYQHELEETTVPEIQRTSLGNVVLLLKSL
GIHDLMHFDFLDPPPYETLLLALEQLYALGALNHLGELTTSGRKMAELPVDPMLSKMILA
SEKYSCSEEILTVAAMLSVNNSIFYRPKDKVVHADNARVNFFLPGGDHLVLLNVYTQWAE
SGYSSQWCYENFVQFRSMRRARDVREQLEGLLERVEVGLSSCQGDYIRVRKAITAGYFYH
TARLTRSGYRTVKQQQTVFIHPNSSLFEEQPRWLLYHELVLTTKEFMRQVLEIESSWLLE
VAPHYYKAKELEDPHSKKMPKKIGKTREELG
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacggtttccggtctccgccgtccgggaagacggttttgggctgtaggaaagcg
agccctaaagtcctaaggcaggtcctttgcggaactcaaactcgagccaggcctccaggc
ctccaggcctccgacgggcccagccaccagcgtggctactggagacggttcagggccaga
aacggggcagcgtgggtcaccatggcgacgccggctggactggagcgctgggtgcaggac
gagctgcattcggtgctggggctgagcgagcggcacgtggcccagttcctgattggtacc
gcgcagcgcagcgcctcggccgaggagtttgtgcagcgcctgcgagacaccgataccctg
gacctcagcgggccggcacgggacttcgccctgaggctctggaacaaggtaccacggaag
gcattggtagaaaagccagctcgggtggccgagcgagaggcccgagccctgctggagaag
aaccgatcctataagttgctggaagacagtgaggagagcagcgaggagactgtaggcaga
gctgggagcagtctccagaagaagcgtaaaaaacggaaacacctcaggaagaaatgtcag
gaggaggaagaagaagaggaggaagagatttctgagaaagggaagagaaagacagggggg
agtaaacagcagactgagaagccagagtcggaggatgagtgggagcggtccgagcgagag
cgccttcaggacctggaagaacgcgatgccttcgctgagcgggttcggcagcgggacaag
gatcgaactcgcaatgtcctggagcggtcagacaagaaggcttatgaagaggctcagaag
cgcctcaagatggctgaggaagaccggaaagccatggtccccgagctgcggaagaaatcc
cgccgagagtacttggctaagcgggaacgagagaagcttgaggacctggaggctgagctg
gctgatgaggagttcctttttggggatgtggagctgagccgacatgaacggcgggagctc
aaatataagcggcgagttcgggatctggcccgagagtaccgggcggctggggagcaggag
aagctggaggccaccaatcgttaccacatgcccgaggagacccgaggccagccggcacga
gctgtagatctggtggaggaggagtccggcgcccctggggaggagcagcggcgctgggag
gaggcccggctgggggcagcgtccctgaagtttggggcccgagatgctgcctcccaggag
cccaagtaccagctggtgctggaggaagaggagaccattgagtttgtccgggccactcag
ctccagggcgatgaggagccatcaggtccaccgcctccaacccaggcccagcagaaggag
tccatccaggctgtccgccgcagcctcccggtgttccccttccgcgaggagctcctggct
gctattgctgaccatcaggtcctcatcatcgagggtgagacgggctccgggaagaccacc
cagatcccgcagtatctctttgaggagggttatacaaagaaaggaatgaagattgcctgc
acccagccccggagagtggcagccatgagtgtggctgcccgggtggcccgggagatgggt
gtgaagcttggaaatgaggttggctacagcatccgctttgaggactgcacgtcagagcga
actgtcctccgctacatgacagacgggatgctcctccgggagttcctctctgaacctgac
cttgcaagttacagtgtggtgatggtagatgaggcgcatgaacggaccctacacacagac
attctttttgggttaatcaaagatgttgctcgcttccggcctgagctgaaggtcttggtg
gcttcagccacactggacactgcccgcttttccaccttctttgatgacgcccctgtcttc
cgaatccctggacgcaggtttccagttgacatcttctataccaaggctccggaggctgac
tacctggaagcttgtgtagtgtctgtgctgcagatccatgtgacccagccccctggggat
atcctggtgttcctgacaggacaggaggagattgaggccgcctgtgagatgctccaggat
cgctgccgccgcctgggctccaaaatccgggagctcttggtgttacccatttatgccaac
ctgccttctgacatgcaggctcgtatcttccagcccacgccccctggggcacgaaaggtg
gttgtggcaacaaacatcgctgagacatcgctcaccatcgaaggcatcatttatgtgctg
gatccagggttctgtaagcagaagagctacaaccctcgcacgggcatggaatccctcact
gtcacaccctgcagcaaggcctcagccaatcagcgggccggtcgggcgggtcgggtggct
gccgggaagtgcttccgcctgtatactgcctgggcctatcagcacgagctggaggaaacc
actgtgccggagatccagaggaccagcttgggcaatgttgtgttgctgctcaagagctta
gggatccatgacctaatgcacttcgatttcctggaccctccaccatatgagaccctactg
ctggctttggagcaactgtatgccctgggagccctcaaccaccttggggagctcaccacg
tctggtcgaaagatggcagagctaccagtggaccccatgctgtctaaaatgatcctggcc
tctgagaaatatagctgttcagaagagatcctgacggtggctgccatgctgtctgtcaac
aactccatcttctaccgacccaaggacaaggttgtccatgctgacaatgcccgtgtcaac
tttttcctccctggtggagaccacctggttctgctgaacgtttatacacagtgggctgag
agtggttactcttcccagtggtgctatgagaacttcgtacagttcagatcaatgcgccga
gcccgggacgtgcgggaacagctggaggggctcttggaacgcgtggaagttggtctcagc
tcttgccagggggactacatccgtgtacgcaaggccatcacagctggttatttctaccac
acggcccggttgactcgtagcggctatcgcacagtcaaacagcagcagacagtgttcatt
caccccaactcctcactctttgaggaacagccacgctggctgctctaccatgaacttgtc
ttgaccaccaaggagttcatgagacaggtattggagattgagagcagttggcttctggag
gtggctccccactattataaggccaaggagctagaagatccccattctaagaaaatgcca
aaaaaaataggcaagactcgagaagagctagggtaa
DBGET
integrated database retrieval system
