Ursus americanus (American black bear): 123797025
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Entry
123797025 CDS
T07931
Symbol
PABPC1L
Name
(RefSeq) polyadenylate-binding protein 1-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
uar
Ursus americanus (American black bear)
Pathway
uar03015
mRNA surveillance pathway
uar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
uar00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
123797025 (PABPC1L)
09123 Folding, sorting and degradation
03018 RNA degradation
123797025 (PABPC1L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
uar03019
]
123797025 (PABPC1L)
03041 Spliceosome [BR:
uar03041
]
123797025 (PABPC1L)
Messenger RNA biogenesis [BR:
uar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
123797025 (PABPC1L)
mRNA cycle factors
Stress granule specific factors
123797025 (PABPC1L)
Spliceosome [BR:
uar03041
]
Complex C
Other components
Complex C specific factors
123797025 (PABPC1L)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_10
RRM_5
RRM_MARF1
Motif
Other DBs
NCBI-GeneID:
123797025
NCBI-ProteinID:
XP_045660664
LinkDB
All DBs
Position
Unknown
AA seq
650 aa
AA seq
DB search
MNASGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQ
QPADAERALDTMNFEVIKGQPVRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFS
TFGNILSCKVVCDDHGSRGFGFVHFETHEAAQQAIATMNGMLLNDRKVFVGHFKSRRERE
AELGARAVEFTNIYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRDDIGHSRGFGFVNFEK
HEEAQKAVTDMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRATRYQGVNLYVKN
LDDSIDDEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT
KPLYVALAQRKEERKAILTNQYMQRLSTVRALGGPLLGSFQQPASYFLPAVPQPPAQAAY
YASGPSVQPAPRWTAQPPRVSSTYPPAASMVRPPAMLRRPPAQVSSVRQASTQVPPPGPH
TQRVANIGTQTTGASGVAYSTPTGPALTHKYSSATHNPGVQEPAVRIPGQEPLTASMLAA
APLHEQKQMIGEWPVPLLWSRKQGVAERWPAWWEKPRMEVRHVDKVQRCCRPTCWVTLLG
SPLLSRPPSLSRLKMLSVEMVPRFPQLCCPSPRTGWGEPSCGQIGGQESG
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atgaacgccagcggcccgggctacccgctcgcctcgctctacgtgggcgacctgcacccc
gacgtgaccgaggccatgctgtacgagaagttctcgcccgccggccccatcctgtccatc
cgcgtgtgccgcgacgtggccacccgccgctcgctgggctacgcctacatcaacttccag
cagccggccgacgcggagcgggcactggacacgatgaactttgaagtgatcaaaggccag
cctgtccgcatcatgtggtcccagcgagacccaggactccgcaagtcgggtgtgggcaac
atcttcatcaagaacctggaggactccattgacaacaaggccttatatgacaccttctcc
acctttgggaacatcttgtcttgcaaggtggtgtgtgacgatcatgggtcccggggcttc
ggctttgtccactttgagacccacgaggctgcgcagcaggccattgccaccatgaacggg
atgctgctgaatgaccgcaaagtcttcgtgggccacttcaagtcccgacgggagcgggaa
gcagagctgggagctcgggccgtggagttcaccaacatttatgtgaagaacctccatgtg
gacgtggacgagcagggcctgcaggacctcttctcccagtttgggaaaatgctgagtgtg
aaggtgatgagggacgacatcggccactcccgaggcttcggctttgtcaactttgagaag
cacgaagaagcccagaaggctgtgacggacatgaatgggaaggaggtgagcgggcggctg
ctgtacgtgggccgggcccagaagcgggtggaacggcagaatgagctgaagcgtaggttc
gagcagatgaagcaggaccgggcgacccgttaccagggtgtgaacctgtacgttaagaac
ctggatgactccatcgatgatgagaagctgagaaaagagttctctccctatggcgtgatt
accagcgctaaggtgatgacagagggtggccacagcaaggggtttggctttgtgtgtttt
tcctccccagaagaggcgacgaaggccgtgaccgagatgaacgggcgcatcgtgggcacc
aagccgctgtacgtggcactggcccagcgcaaagaggagcggaaggccatcctgaccaac
cagtacatgcagcgtctctccacggtgcgggctctgggcggccccctcttgggctccttc
cagcagcccgccagctacttcctgcccgccgtgccccagcctccagcccaggctgcgtac
tatgcctccggcccctccgtgcagcccgcccccaggtggacggcccagcctccgagagtc
tcctccacctaccctccagctgcctcaatggtccggccaccagccatgttgcggcgcccc
ccggcccaggtcagcagtgtcaggcaggcctctacccaggtgccacccccggggccccac
acccaaagagtggccaacattggtacccagaccacaggagccagcggggtggcatattct
accccaaccgggcctgccctgacacacaaatattcctcagcaacacacaaccctggggtg
caggagccggctgtgcgcatcccgggacaggagcccctgacggcgtccatgctggccgcg
gccccactgcacgagcaaaagcagatgattggtgagtggcctgtccccctactctggagc
aggaagcagggggttgctgagaggtggccagcctggtgggaaaaacctcgaatggaggtc
agacatgtggacaaggtccagcgttgctgcagacccacctgctgggtgaccttgctgggg
tcgcctctgctctctcggccgccctccctctctcgtcttaaaatgctttcagtcgagatg
gtcccgaggtttcctcagctctgctgtccaagcccccgcacgggctggggagagcccagc
tgtgggcagatcgggggccaggagtcagggtag
DBGET
integrated database retrieval system
