Ursus americanus (American black bear): 123797535
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Entry
123797535 CDS
T07931
Symbol
PRKN
Name
(RefSeq) E3 ubiquitin-protein ligase parkin isoform X1
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
uar
Ursus americanus (American black bear)
Pathway
uar04120
Ubiquitin mediated proteolysis
uar04137
Mitophagy - animal
uar04141
Protein processing in endoplasmic reticulum
uar05012
Parkinson disease
uar05014
Amyotrophic lateral sclerosis
uar05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
uar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
123797535 (PRKN)
04120 Ubiquitin mediated proteolysis
123797535 (PRKN)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
123797535 (PRKN)
09160 Human Diseases
09164 Neurodegenerative disease
05012 Parkinson disease
123797535 (PRKN)
05014 Amyotrophic lateral sclerosis
123797535 (PRKN)
05022 Pathways of neurodegeneration - multiple diseases
123797535 (PRKN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
uar04131
]
123797535 (PRKN)
04121 Ubiquitin system [BR:
uar04121
]
123797535 (PRKN)
03029 Mitochondrial biogenesis [BR:
uar03029
]
123797535 (PRKN)
Enzymes [BR:
uar01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
123797535 (PRKN)
Membrane trafficking [BR:
uar04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
123797535 (PRKN)
Aggrephagy
Other aggrephagy associated proteins
123797535 (PRKN)
Xenophagy
Other xenophagy associated proteins
123797535 (PRKN)
Ubiquitin system [BR:
uar04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
123797535 (PRKN)
Mitochondrial biogenesis [BR:
uar03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
123797535 (PRKN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
ubiquitin
IBR_2
IBR_1
Rad60-SLD
IBR
Rcat_RNF216
Dsc3_N
Rad60-SLD_2
Motif
Other DBs
NCBI-GeneID:
123797535
NCBI-ProteinID:
XP_045661429
LinkDB
All DBs
Position
Unknown
AA seq
466 aa
AA seq
DB search
MSWSVFVRFNSSHGFPVEVNSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDLTVQS
CDLDQQSIVHVVLRPWREGQEREATGGDSPRKAVDGSEREPESLTRVDLSSSVLPAHSVG
LAVILNNDYERTLPAGRPAGRRTYNSFYVYCKGPCQRVQPGKLRVRCSTCRQATLTLAQG
PSCWDDVLIPNRMTGECQSANCPGTAAEFFFKCGAHPTSDKETSVALNLITTNSRDITCI
TCTDIRSPVLVFQCNHRHVICLDCFYLYCVTRLNDRQFIHDPQLGYSLPCVAGCPNSLIK
ELHHFRILGEEQYNRYQQYGAEECVLQMGGVLCPSPGCGAGLLPEPGMREVTCEGGSGLG
CGLVFCRDCKEAYHEGECGALFEASGAATQAYRVDEKAAEQARWEEASKETIKKTTKPCP
RCHVPVEKNGGCMHMKCPQPQCQLEWCWACSCEWNRACMGDHWFDV
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgtcttggtcagtgtttgtcaggttcaactccagccatggtttcccagtggaggtcaat
tccgacaccagcatcttccagctcaaggaggtggttgctaagcgacagggggttccagct
gaccagttgcgtgtgattttcgctgggaaggagcttaggaatgacttgacagtgcagagc
tgcgacctggatcagcagagcatcgttcatgtcgtgctgagaccctggcgtgaaggccaa
gaaagggaggccactggaggggacagcccacgaaaggccgtggacggctcggagcgagag
cctgagagcttgacgcgcgtggacctcagcagctccgtccttcccgcccactcggtgggt
ctggctgtgatcctgaacaacgactacgagaggaccctgcctgccggaaggccagcaggt
agacgaacctacaacagcttttatgtttattgcaaaggcccctgtcaaagagtacagcca
ggaaaactccgcgtgcggtgcagcacctgccgacaggcaacgctcaccttggcccagggt
ccatcttgctgggacgatgtcttaatcccaaaccggatgaccggtgaatgccaatctgca
aactgccctgggactgccgccgaatttttctttaaatgtggagcacatccgacctccgac
aaggaaacgtcagtagctttgaacctgatcacaacaaacagtcgagacatcacctgcata
acgtgtaccgacatcaggagccctgtcctggtttttcagtgcaatcaccgccacgtgatt
tgcttagactgtttctacttatactgcgtgacaagacttaatgaccggcagtttatccat
gaccctcagcttggctactctctgccttgtgtggctggctgccccaactccctgattaaa
gagctccatcacttcaggattctgggagaagagcagtataaccggtaccagcaatatggc
gctgaagagtgtgtgctacagatggggggcgtgctgtgccccagccccggctgcggagca
gggctgcttcctgagccaggcatgagggaggtcacttgtgaagggggcagcggtctgggc
tgtgggctcgtcttctgccgggactgtaaggaagcgtaccatgaaggtgaatgtggcgcc
ctctttgaagcctcaggagcggctactcaggcctacagagttgatgagaaggccgcggag
caagctcggtgggaagaggcttccaaagaaacaatcaagaaaaccaccaagccctgtccc
cgttgccatgtgcccgtggaaaaaaatggaggatgcatgcacatgaagtgcccacagccc
cagtgccagctggagtggtgctgggcctgcagctgtgagtggaaccgcgcctgcatgggg
gaccactggttcgacgtgtag
DBGET
integrated database retrieval system
