KEGG   Ursus americanus (American black bear): 123798905
Entry
123798905         CDS       T07931                                 
Symbol
TDP1
Name
(RefSeq) tyrosyl-DNA phosphodiesterase 1 isoform X1
  KO
K10862  tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
Organism
uar  Ursus americanus (American black bear)
Pathway
uar03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:uar00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    123798905 (TDP1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:uar03400]
    123798905 (TDP1)
DNA repair and recombination proteins [BR:uar03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     123798905 (TDP1)
SSDB
Motif
Pfam: Tyr-DNA_phospho RMMBL
Other DBs
NCBI-GeneID: 123798905
NCBI-ProteinID: XP_045663602
LinkDB
Position
Unknown
AA seq 636 aa
MTQEGDYGKWTISSSDESEEEKPKLDKPSTSSLPHAGQGAANEPRYTCSEARKAAHRRKL
SPVKFNTDSQVSPLKRQKSGSQEDLGWCLSSSDDELQPGTQQKEAKNVVVKEESGISSPK
DRATQRTGNHGPPAHHVLKEEEEEYETSGEGQDIWDMLEKGNPFQFYLTRVSGIKPKYNS
GALHIKDILSPLFGTLVSSAQFNYCFDVDWLIKQYPPEFRKKPILLVHGDKREAKAHLHA
QAKPYENISLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIHADWHQKTQGIWLSP
LYPRSIHGTHRSGESATHFKTDLISYLMAYNAASLKEWIDIIHEHDLSETKSEALKWGPV
IFLLTWSTAKVTDFIAGTLSFVYLIGSTPGRFQGSQKDNWGHFRLRKLLKEHASPKGESW
PIVGQFSSIGSMGADDSKWLCSEFKESLVTLGKESRTPGRSAVPLHLIYPSVENVRTSLE
GYPAGGSLPYSIQTAEKQNWLHSYFHKWSADTSGRSNAMPHIKTYMRPSPDFSEIAWFLV
TSANLSRAAWGALEKNGTQLMIRSYELGVLFLPSAFGLDSFKVKQKFFFGSKEPAAAFPV
PYDLPPELYGSKDRPWIWNIPYTKAPDTHGNMWVPS
NT seq 1911 nt   +upstreamnt  +downstreamnt
atgactcaagaaggtgattatgggaagtggacaatatccagtagtgatgaaagtgaggag
gaaaagccaaaactagacaagccatctacttcttccctcccccatgctgggcaaggagcc
gcaaatgaaccaagatacacctgttctgaggctaggaaagctgcccatagaaggaaattg
tcacctgtgaagttcaacacagattcacaagtttcacctctgaaaaggcagaagagtggt
tcccaggaagacctaggttggtgtctctccagcagcgatgatgagctgcaaccaggaaca
cagcagaaggaggctaagaacgtggtggtcaaagaggagagcggcatctcttctcccaaa
gaccgtgccacccaaagaactggaaatcatggccctcccgcccaccatgtactaaaagag
gaggaagaggagtacgaaacctcaggggaaggccaagacatttgggacatgttggaaaaa
gggaaccccttccaattttacctcactagagtctcgggaattaagccaaagtataactct
ggagccctccacatcaaggatattttatctcctctatttgggacacttgtatcttcagct
cagtttaactactgctttgacgtggactggctcataaaacagtatccaccagagttcagg
aagaaaccaattctgcttgtgcacggagataaacgagaagctaaggctcacttacatgcc
caggccaagccttatgaaaacatttccctctgccaggcaaagttggacattgcatttgga
acacaccacacgaaaatgatgttactactgtatgaagagggcctccgggttgtcatacac
acctccaacctcatccatgctgactggcaccagaaaactcagggaatatggttgagcccc
ttatacccacgaagtatccatggaacccacagatctggagaatcagcaacacattttaaa
actgatctcatcagctacttgatggcttataatgctgcttcactcaaggagtggatagat
atcatccacgagcatgatctttctgaaaccaaatctgaggcactaaagtgggggccagta
atcttcctgctcacctggagtactgctaaagtgactgatttcattgccggtaccttatcc
tttgtttatcttattggatcaaccccaggacgctttcaaggaagtcaaaaagataattgg
ggacattttaggcttagaaagcttctgaaagagcatgcctctcctaaaggagagtcttgg
ccgatagtaggtcagttttcaagcattgggtctatgggagctgatgactcgaaatggttg
tgttccgagtttaaagaaagcttggtgacgctggggaaggaaagccggaccccagggaga
agtgccgttcctcttcatctgatctatccttctgtggaaaatgtgcgaaccagcttagaa
ggatatccagctgggggctctcttccctatagcatccagacagctgaaaaacagaattgg
ctccattcctattttcacaaatggtcggctgacacatctggccgcagcaatgctatgcca
catattaaaacatatatgagaccttctccagacttcagtgaaattgcttggttccttgtc
acaagcgcaaatctctccagggccgcctggggagcattagagaagaacggcacccagctg
atgatccgttcctatgagcttggggtccttttcctgccgtcagcatttggcctggacagc
ttcaaagtaaaacagaaattcttctttgggagcaaggagccagcggccgcctttcctgtg
ccatatgacctgcctccagaactgtatggaagtaaagatcggccatggatttggaacatt
ccttataccaaagcaccagatacacatgggaatatgtgggttccctcctga

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