Ursus americanus (American black bear): 123803064
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Entry
123803064 CDS
T07931
Symbol
HELZ
Name
(RefSeq) probable helicase with zinc finger domain isoform X1
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
uar
Ursus americanus (American black bear)
Brite
KEGG Orthology (KO) [BR:
uar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
uar03019
]
123803064 (HELZ)
Messenger RNA biogenesis [BR:
uar03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
123803064 (HELZ)
3'-5' decay
Other 3'-5' decay factors
123803064 (HELZ)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_12
AAA_11
AAA_19
zf-CCCH
UvrD-helicase
AAA_30
ResIII
PhoH
PAM2
zf_CCCH_4
Mov-10_helical
zf-CCCH_4
AAA_22
AAA_7
Bac_DnaA
AAA_16
Mg_chelatase
AAA_5
Motif
Other DBs
NCBI-GeneID:
123803064
NCBI-ProteinID:
XP_045670191
LinkDB
All DBs
Position
Unknown
AA seq
1945 aa
AA seq
DB search
MEDRRAEKSCEQACESLKRQDYEMTLKHCTEALLSLGQYSMADFAGPCPLEIESIKIESL
LYRIASFLQLKNYGQADEDCRHVLGEGLAKGDGAFQAVLCCMQLKGKLQLVSNILAKSLT
GESLNGMVTKDLTRLKTLLTETETATSNVLSGYHVEDLEGGSCNGWHFRPPPRGITSSEE
YTLCKRFLEQGICRYGAQCTSAHSQEELAEWQKRYASRLIKLKQQNENKQLSGSYMETLI
EKWMNSLSPEKVLSECIEGVKVEHNPDLSVTVNTKKSHQTWTFALTCKPARMLYRVALLY
DAHRPHFSIIAISAGDSTTQVSQEVPENCQEWIGGKMAQNGLDHYVYKVGIAFNTEIFGT
FRQTIVFDFGLEPVLMQRVMIDAASTEDLEYLMHAKQQLVTTAKRWDSSSKTIIDFEPNE
TTDLEKSLLIRYQIPLSADQLFTQSVLDKSLTKTNYQSRLHDLLYIEEIAQYKEVSKFNL
KVQLQILASFMLTGVSGGAKYAQNGQLFGRFKLTETLSEDTLAGRLVMTKVNAVYLLPVP
KEKLVQTQGTKEKVYEATIEEKTKEYIFLRISRECCEELNLRPDYDTQVELQFQLNRLPL
CEMHYALDRIKDNGVLFPDTTMTPTIPWSPNRQWDEQLDPRLNAKQKEAVLAITTPLSIQ
LPPVLIIGPYGTGKTFTLAQAVKHILQQQETSRILICTHSNSAADLYIKDYLHPYVEAGN
PQARPLRVYFRNRWVKTVHPVVHQYCLISSAHSTFQMPQKEDILKHRVVVVTLNTSQYLC
QLDLEPGFFTHILLDEAAQAMECETIMPLALATKNTRIVLAGDHMQLSPFVYSEFARERN
LHVSLLDRLYEHYPAEFPCRILLCENYRSHEAIINYTSELFYEGKLMASGKQPAHKDFYP
LTFFTARGEDVQEKNSTAFYNNAEVFEVVERVEELRRKWPVAWGKLDDGSIGVVTPYADQ
VFRIRAELRKKRLSDVNVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTPIKKKEQLLEDS
TEDLDYGFLSNYKLLNTAITRAQSLVAVVGDPIALCSIGRCRKFWERFIALCHENNSLHG
ITFEQIKAQLEALELKKTYVLNPLAPEFIPRALRLQHSGNTNKLQQSPPKGKSLHHTQND
HFQNDGIVQPNPSVLIGNPIRAYTPPPPLGPHPNLGKSPSPVQRIDPHTGTSILYVPAVY
GGNVVMSVPLPVPWTGYQGRFAVDPRILTHQAAMAYNMNLLQTHGRGSPIPYGLGHHPPV
SIGQPQNQHQEKEQHEPSRNGKSDTNNPGPEINKIRTPEKKPTESKQIDLESNPQNRSPE
SRPGVVYPNTKFHRKDNLNPRHINLPLPAPHAQYAIPSRHFHPLPQLPRPPFPIPQQHAL
LNQQQSNLPEPPNQMPPQPNQVVPPQNPLNQLTQQPPPQLSPAYQAGPNSAFFNSAVSHR
PQSPPAEAVIPEQQPPPMLQEGPSPLRAIAQPGPLLPSHLNNFTDENPPGLPIGEALDRM
HGSVALETLRQQQVRLQQWNEHHAYLSQGSIPYPHHHHPHPHLQHLPQPPVGLHQPPVRA
DWKLPSSAEEEAETTDSRFQDLIRELSNRDQSETRELAEMPPPQSRLLQYRQIQTRSPPA
VPSPPSSTDHSSHFSNFNDNSRDIEVANNPAFPQRLPPQIFSSPFSLPSEHLAPPPLKYL
APDGAWTFANLQQNHLMGPGFPYGLPPLPHRPPQNPFVQIQNHQHAIGQEPFHPLSSRTV
SSSSLPSLEEYEPRGPGRPLYQRRISSSSVQPCSEEVSTPQDSLAQCKELQDHNNQSSFN
FASPESWVNTTSSTPYQNIPCNGSSRTAQPRELIVPPKTVKPPEDQLKSENLEVSSSFNY
NVLQHLGQFPPLMPNKQIVESANSSSQQSSGGSKPAMSYASALRAPPKPRPQPEQAKKSS
DPLSLFQELSLGSSSGSNGFYSYFK
NT seq
5838 nt
NT seq
+upstream
nt +downstream
nt
atggaagacagaagagctgagaagtcatgtgaacaagcgtgtgaatctcttaagaggcag
gactatgaaatgaccctcaagcactgcacagaggccctcctttcccttggccagtactcg
atggccgactttgcagggccatgtccactggagatagaaagcatcaaaattgagagtctt
ctttacagaattgcctcatttttgcaactgaaaaactatgggcaagctgatgaagattgt
aggcatgtgctgggagagggcctggccaagggagatggtgcctttcaggcagtgctttgc
tgcatgcaactgaaaggaaagcttcaactggtatccaacattcttgccaagtcgctgacg
ggagagtctctgaatgggatggtaacaaaagatttgacaagactaaaaacacttctcaca
gaaacagagacagcaactagtaacgtcctctctggatatcacgtggaagacttggaaggg
ggatcttgtaatggttggcatttccgcccaccacctaggggaatcacaagcagcgaggaa
tatactttgtgtaaaagatttttagagcaaggaatctgtaggtatggtgcgcagtgtact
tcagcacattcccaggaagaactagcagaatggcagaaaagatatgcttcacgcttgata
aaattgaaacagcaaaatgagaataaacagctctcaggcagttacatggaaaccttgata
gaaaagtggatgaattcattatctcctgagaaagtgcttagtgaatgtatagaaggagta
aaagtagagcataatcctgatctgtcggttactgtcaacaccaaaaaatctcaccagaca
tggacctttgctcttacttgtaagcctgcaagaatgctgtatcgtgtagcattgctttat
gatgctcatcgtcctcattttagtatcattgcaatatctgccggagatagtactacccag
gtatcacaagaagtcccagaaaactgtcaagaatggataggaggaaagatggcccaaaat
ggattagatcattacgtgtataaagtcgggatagcatttaacacagaaatatttggaact
tttcgccaaaccatagttttcgactttggattggaaccagtactcatgcaaagagtaatg
attgatgcagcttctacagaagatcttgaatacctgatgcatgcaaaacaacagctagta
accacagctaagcgttgggattcttcttctaagactattatagattttgaacctaatgaa
actactgatttggagaagagccttcttatcagataccaaattcctctctctgctgaccag
ctgtttacccagtccgttttagacaaatcattgaccaagaccaactatcagtcacggctg
catgaccttctttatattgaggagatagcccagtataaagaagtcagcaagttcaacctt
aaggtgcagttgcagattctagcaagtttcatgctcactggagtttctggaggcgcaaag
tatgctcagaatggacaactatttggtcgctttaagcttactgaaacactttctgaagat
actttggctggacggctggtgatgaccaaagtcaatgctgtttatttattaccagtccct
aaagagaagttagtacagacccagggaaccaaagagaaggtttatgaagctactattgaa
gaaaaaacaaaagaatatatatttttaaggatatccagggaatgctgtgaagaacttaat
cttcggcctgattatgacacacaggttgaacttcagtttcaattaaatcgattacccctc
tgtgaaatgcattatgcgctagacagaatcaaggacaatggggttttgtttccagacacc
actatgactccaaccataccttggagtcccaacagacaatgggatgagcagttggatcct
cggctgaacgcaaaacagaaagaggctgttctggccattacaacccccctgtcaatacag
ctgcctcctgttctcatcattggaccctatgggacaggcaaaacgttcactctagctcag
gccgtcaagcacatactccagcagcaggagacgagcaggatcctcatttgcacccattct
aatagtgctgctgacctctacataaaggattatttacatccatatgtagaagcaggcaat
ccccaggcaagacctctcagggtatatttcagaaatcgctgggtaaagactgtccaccca
gttgtgcatcagtactgtttgatctcaagcgcacattccacctttcagatgccacagaaa
gaagatattcttaaacaccgagtggtggttgttacattgaatacttcccagtacctctgt
cagttggaccttgaacctgggttttttacacacattctgttagatgaagccgcccaggcc
atggagtgtgaaaccattatgcctctagcattagcaactaagaacactcggattgtcttg
gctggtgaccacatgcagctcagtccttttgtttacagcgagtttgccagggagagaaac
cttcatgtttcattacttgatcgactctatgagcattaccctgccgaatttccatgtagg
atcctcctatgtgagaactaccgctcccatgaagctatcatcaattacacctctgagctc
ttctatgaaggcaaactgatggccagtggaaagcaaccagcacacaaggatttctaccca
ctaactttttttacagcacgaggggaagatgtacaagaaaaaaatagcacagctttttat
aataatgcagaggtattcgaagtggtggaacgtgtggaagagttgagacggaagtggcca
gtagcgtgggggaagttggatgatggcagtatcggtgtggtaactccatatgctgatcaa
gtgtttaggatacgtgctgaacttcgaaaaaagagattatctgatgttaatgtagaaagg
gtgctaaatgttcaaggaaaacagttcagagttttgtttcttagcacagtacgtacaagg
catacttgtaaacataaacagacaccaattaaaaagaaagagcaactgctggaagattcc
acagaggatttagattatggttttttatctaactacaaacttctcaatactgccatcaca
agagcacagtccctggttgctgtggtgggtgatcccattgctctgtgctctattggaaga
tgcaggaaattttgggaacggtttattgccctgtgtcatgaaaataatagcctacacgga
atcacttttgaacagatcaaagctcagctagaggctttagaactcaagaagacgtatgtg
ttgaatccactggctcctgaatttatcccccgggctctaagactgcagcattcaggaaat
accaacaaactgcagcagtcaccccccaaggggaaaagcctccatcatacccagaatgat
catttccagaatgatggaattgttcagcccaatccttctgtacttattggcaatcctatt
agagcatatactcctccaccccctcttggacctcacccaaatttggggaaatctccaagc
cctgttcaaagaatagatcctcacactgggacaagtattctttatgtacctgctgtctat
ggagggaatgtagttatgtcggtgcctttacctgtaccatggacagggtaccagggcaga
tttgcagtcgatcctcggatccttacacaccaggcagcgatggcctacaatatgaacctc
ttacagacacacggacgggggtctcccataccgtatggccttgggcaccacccacctgtc
agcatagggcagccacaaaaccagcatcaggagaaggagcaacatgagccaagtcgaaat
ggtaaaagtgatacaaataatcctggacctgaaattaataagattcgaacaccagagaaa
aagcctacagaatcaaaacagattgatttggaatcaaatccacagaacagaagtcctgag
tcgcgtcctggtgttgtttatcccaataccaaatttcatcgcaaagataatctcaatccg
agacacataaatcttcctctccctgctccccatgcacagtatgcaatccccagtcgtcat
tttcatcccctcccccagctacccagaccaccgtttccgattccgcagcagcacgccttg
ttgaatcagcagcagagtaatttgcctgagccaccaaatcagatgccaccccaaccaaat
caggtagtcccgccacagaacccgttgaaccagctgactcagcagccacctcctcaactt
tctcctgcctatcaggcaggacccaacagcgctttctttaatagtgcagtttctcaccga
ccacagtcccctcctgcagaggcggtgattcctgagcagcagccccctcccatgctgcaa
gaaggccccagtcctctgcgagccatcgcgcagcctggccccctccttccttcacatctg
aataacttcactgatgagaaccccccaggattgcctataggggaggctctagatcgtatg
cacgggagtgtagctctagaaacactaaggcagcagcaagttcggttacagcagtggaat
gagcatcacgcctatctcagtcagggcagtattccatacccacaccatcaccatcctcac
cctcacctccagcatcttcctcagccgcccgtcggattgcatcagccaccagtgagagcg
gactggaagctccccagcagtgccgaagaggaagcagaaacaacagactcgaggtttcaa
gacttaatcagagaactatctaatcgtgatcaaagtgaaacacgggaactagctgaaatg
ccaccacctcaatcaagacttttgcaatatagacaaattcagactaggagcccaccagca
gtcccatctcccccatccagcacagaccacagtagccacttttctaactttaatgacaac
agcagagacattgaagtagccaacaacccagcatttccacagcgcctaccgccccagata
ttcagctcgcctttctcgttgccatctgaacaccttgcccctcctcccttgaaatacctg
gcacctgatggagcatggacttttgctaacttacaacagaatcacctgatggggccgggt
tttccctatggcctacctccattgcctcacaggccaccgcaaaacccttttgtacaaata
cagaatcatcaacatgctattggtcaagagccatttcacccattgtcatctcgaacagta
tcttcttcttcgctccctagcttagaagagtatgaacccagaggacctggtcggcccttg
taccaaagaagaatctcatctagctcagtccagccttgttctgaagaagtaagcactcct
caagacagtcttgctcagtgtaaagagcttcaggaccataataaccaatcttctttcaac
tttgcatccccggagtcctgggtaaacaccacctcatctaccccctatcagaacattccg
tgtaatggatccagcaggacagctcagcccagagagttgatagttccacccaagaccgtc
aaaccccctgaggatcaactgaagtctgagaacctcgaggtgtccagttccttcaactat
aatgtgctgcagcatctcggccagttcccccctctcatgcccaacaagcagatcgtggag
tcggccaacagcagtagccagcagagctctgggggcagcaagcccgccatgtcctatgcc
agcgctttgcgggcccctcccaagcccaggccccagcctgagcaggccaagaagagtagc
gaccctctgtctctgttccaggaactgagcctggggagctcatcaggcagcaatggcttt
tactcctattttaaataa
DBGET
integrated database retrieval system
