Ursus americanus (American black bear): 123803479
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Entry
123803479 CDS
T07931
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
uar
Ursus americanus (American black bear)
Pathway
uar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
uar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123803479 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
uar03019
]
123803479 (EDC4)
Messenger RNA biogenesis [BR:
uar03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123803479 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
123803479 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_WDR5
Beta-prop_EDC4L
Beta-prop_WDR3_1st
DUF445
Beta-prop_THOC3
Beta-prop_TEP1_2nd
WD40_CDC20-Fz
Beta-prop_HPS5
WD40_Prp19
WDR55
Motif
Other DBs
NCBI-GeneID:
123803479
NCBI-ProteinID:
XP_045670933
LinkDB
All DBs
Position
Unknown
AA seq
1403 aa
AA seq
DB search
MASSCASIDIEDATQHLRDILKLDRPAGGPSGESQRPSNAYNGDLNGLLVPDPLCSGDGT
STNKPGLRAMPPINLQEKQVICLTGDDSSTCIGILAKEVEIVASSDSSISSKARGSNKVK
IQPVAKYDWEQKYYYGNLIAVSNSFLAYAIRAANNGSAMVRVISVSTSERTLLKGFTGSV
ADLAFAHLNSSQLACLDEAGNLFVWRLALVNGKIQEEILVHIQQPEGTPLNHFRRIIWCP
FIPEESEDCCEEGSPTVALLHEDRAEVWDLDMLRSNHSTWPVRVSQIKQGFIVVKGHSTC
LSEGALSPDGTVLATASHDGFVKFWQIYIEGQDEPRCLHEWKPHDGRSLSCLLFCDNHKK
QDPEVPFWRFLITGADQNRELKMWCTVSWTCLQTIRFSPDIFSSVSVPPSLKVCLDLSAE
YLILSDVQRKVLYVMELLQNQEEGRACFSSISEFLLTHPVLSFGIQVVSRCRLRHTEVLP
AEEENDSLGADGTHGAGAMESAAGVLIKLFCVHTKALQDVQIRFQPQLNPDVVAPLPTHT
THEDFTFPIAFGETRPELGSEGLGSSTQGSQPDPRRIVELPAPADFLSLSNETKPKLMTP
DAFMTPSTSLQQIAASPSSSSSSSSSSSSSSLTAVSAMSSTSAVDPSLPRPPEELTLSPK
LQLDGSLTMSSSSSLQASPRSLLPSLLPGPADKLTPKAPGQVPTAASALSLELQEVEPLG
LPQASPSRTRSPDVISSASTALSQDIPEIASEALSRGFVSSAPEGLEPDSMASAASALHL
LSPRPRPGPELGSQLGLDGGPGDGDRHSTPSLLEAALTQEATAPDSQVWPTAPDITRETC
SSLAESPRNGLQEKHKSLAFHRPPYHLLQQHDSQDASAEQSDHDDEVASLASAAGGFGTK
VPTPRLPAKDWKTKSSPRASPKLKRKGKKDDGDSAVGSRLMEHQVAEPPEDWPALIWQQQ
RELAELRHSQEELLQRLCTQLEGLQSTVTGHVERALESRHEQEQRRLERALAEGQQRGGQ
LQEQLTQQLSQALSSAVAGRLERSIRDEIKKTVPPCVSRSLEPVAGQLSNSVATKLTAVE
GSMKENISKLLKSKNLTDAIARAAADTLQGPMQAAYREAFQSVVLPAFEKSCQAMFQQIN
ESFRLGTQEYLQQLESHMKSRKAREQEAREPVLAQLRGLVSTLQGATEQMAATVSSSVRA
EVQHQLHVAVGSLQESILAQVQRIVKGEVSVALKEQQAAVTSSIMQAMRSAAGTPVPAAH
LDCQAQQAHILQLLQQGHLNQAFQQALTAADLNLVLYVCETVDPGQVFGQPPCPLSQPVL
LSLIQQLASDLGTRTDLKLSYLEEAVMHLDHSDPITRDHMGSVMAQVRQKLFQFLQAEPH
NSLGKVARRLSLMLHGLVTPSLP
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctcctgcgcgagcatcgacatcgaggacgccacgcagcacctgcgggacatc
ctcaagctggaccggcccgcggggggtcccagtggagagagccagcggccatctaatgcc
tacaatggggatctcaacgggcttcttgttccagaccccctctgctcaggtgatggtact
tcaacaaacaagcctggtctccgggccatgccacctattaaccttcaggaaaagcaggtc
atctgtctcacaggagatgacagctctacgtgcattgggattttggccaaggaggtggag
attgtggccagcagtgactctagcatctcaagcaaagcccggggcagcaacaaggtgaag
atccagcctgtggccaagtatgactgggaacagaaatactactatggcaacctgattgct
gtgtccaactccttcttggcctatgccattcgggctgccaacaatggctcggcgatggta
cgggtgatcagtgtcagcacttcagagcggaccctgctgaagggcttcacaggcagtgtg
gctgatctggcctttgcacacctcaattcctcacagctggcctgcctggatgaggcaggc
aacctgttcgtgtggcgcttggcactggttaatggcaaaattcaagaagagatcttggtc
cacatccagcagccagagggcacaccactgaaccacttccgcaggatcatctggtgcccc
ttcatcccggaggagagtgaggactgctgtgaggagggcagccccacggtggctctgttg
catgaggaccgggctgaggtgtgggatctggacatgctccgctccaaccacagcacctgg
cctgtgcgtgtcagccaaatcaagcaaggcttcatcgtcgtaaaaggccacagcacttgc
ctgagtgaaggggccctctcacctgatgggactgtcctggctactgcaagccatgatggc
tttgtcaagttctggcagatctacattgaggggcaggacgagccaaggtgtctgcatgaa
tggaagcctcatgatgggcggtccctttcctgcctcctgttctgtgacaaccacaagaaa
caggaccctgaagtccctttctggaggttccttatcactggtgctgaccagaatcgggag
ctaaagatgtggtgcacagtgtcctggacctgcctgcagaccattcgcttctccccagat
atcttcagctcagtgagtgtgccccccagcctcaaggtttgtctggacctctcagcagaa
taccttattctcagcgatgtgcaacggaaggtcctctacgtgatggagctgctgcagaac
caggaggagggccgtgcctgcttcagctccatctcggagttcctgctcacccatcctgtg
ctgagcttcgggatccaggttgtgagtcgctgccgactgcggcacactgaggtgctgcct
gccgaggaggagaatgacagcctaggggctgatgggacccatggagctggtgccatggag
tctgcagctggggtgctcatcaaactcttctgtgtgcatactaaggcattgcaggacgtg
cagatccgtttccagccgcagctgaaccctgatgtcgtggccccgctccccacccacact
acccacgaggacttcactttccccatagcatttggagagactcggcctgaactgggctct
gagggcctggggtcatctacccaaggctcccagcctgacccccgacgcatagtggagctg
cctgcacccgctgacttcctcagtctgagcaatgagaccaagcccaagctcatgacccct
gacgccttcatgacacctagcacctccctgcagcagattgctgcgtcccccagcagcagc
agcagcagcagctccagctccagctcctcatctctcacagctgtgtctgctatgagcagt
acctcagccgtggacccctccttgcccaggccacctgaggagctgaccttgagccccaag
ctgcagctggatggcagtctgacaatgagcagcagtagcagcctgcaagcaagcccacgc
agcctcttgcccagtctgctcccaggtccagctgacaaactgactcccaaagcacctggg
caggtgcctactgctgcctctgcgctgtcactggagctgcaggaagtggagcccctgggg
ctaccccaggcttctcctagccgcacccgctcccctgatgttatctcctcagcttccact
gccctgtcccaggacatccctgagatcgcatctgaggccctgtcccgtggttttgtctcc
tctgctcctgagggtcttgagccagacagtatggcctcggctgcctcagcactacacctg
ctgtccccacggccccggccagggcccgagcttggctcccagcttggcctggatggaggc
cctggggatggggatcggcatagtaccccttcccttttggaggcagcactgacccaggag
gccacagcccctgacagtcaggtctggcccacggcaccagacattactcgtgagacctgc
agcagcctggcagagagtcccaggaatggcctccaggagaagcacaagagcctggccttc
caccgaccaccttatcacctgctgcagcaacacgacagccaggacgccagtgctgagcaa
agtgaccatgatgatgaggtggctagccttgcctctgctgcaggaggctttggcaccaaa
gttccgactccacggctaccagccaaggactggaagaccaagagttctcctcgagcctca
cccaagcttaagagaaagggcaagaaagatgacggggattcggctgtggggtcccggctc
atggagcaccaggtggcagaacctcctgaggactggccagcactaatttggcaacagcag
agagagctggcagagctgcggcacagccaggaagaattgctgcagcgtctttgcacccaa
cttgaaggcctgcaaagcactgtcacgggccacgtagaacgcgccctggagtcacggcat
gagcaggagcagcggcggctggagcgggcactggctgaggggcagcagcggggtgggcag
ctgcaagagcagctgacacagcagctgtcccaggcactgtcttcggctgtagcggggcgg
ctggagcgcagcatacgggatgagatcaagaagacggtgcctccatgtgtctctaggagt
ctggagccagtggcaggccagctgagcaactcagtggccaccaagctcacagccgtggag
ggtagcatgaaagagaatatctccaagctgctaaagtccaagaacttgacagatgccatt
gcccgagcagctgcagacacattacaggggccaatgcaggctgcctaccgtgaagccttc
cagagtgtggtgctgccggcctttgagaagagctgccaggccatgttccagcagatcaat
gagagcttccgactgggcacccaagaatacttgcagcagctggagagccacatgaagagc
aggaaggcacgtgaacaggaggcacgggagcctgtgttggcccagctgcggggcctggtc
agcacactgcagggtgccactgagcagatggcggccaccgtgtccagcagcgttcgggct
gaggtgcagcaccagctgcacgtggctgtgggcagcctgcaggagtccattttagcacag
gtacagcgcatcgttaagggtgaggtgagtgtagcactcaaggagcaacaggccgccgtc
acgtctagcatcatgcaggccatgcgttcagctgctggcacacctgtccccgctgcccac
ctcgactgccaggcccagcaagcccatatcctgcagctgctgcagcagggccacctcaat
caggccttccagcaggctctgacagctgctgacctgaacctggtgctgtatgtgtgtgaa
actgtggacccagggcaggtttttgggcagccaccctgcccactctcccagcctgtgctc
ctttccctcatccagcagctggcctctgaccttggtactcgaactgacctcaagctcagc
tacctggaagaggctgtgatgcacctggaccacagtgaccccatcactcgggaccacatg
ggctccgtcatggcccaggtgcgccagaagctcttccagttcctgcaggctgagccacac
aactcacttggcaaagtggcccggcgtctcagcctcatgctgcatggccttgtaacccct
agcctcccttag
DBGET
integrated database retrieval system
