Utexia brackfieldae: RHO15_03615
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Entry
RHO15_03615 CDS
T10516
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ubr Utexia brackfieldae
Pathway
ubr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ubr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RHO15_03615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ubr03019
]
RHO15_03615
03009 Ribosome biogenesis [BR:
ubr03009
]
RHO15_03615
Enzymes [BR:
ubr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RHO15_03615
Messenger RNA biogenesis [BR:
ubr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RHO15_03615
Ribosome biogenesis [BR:
ubr03009
]
Prokaryotic type
rRNA helicases
RHO15_03615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_22
DRTGG
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WVD64612
LinkDB
All DBs
Position
803700..805553
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AA seq
617 aa
AA seq
DB search
MTNEVSFVDLGLPEEILNSLNDLGFTKPSPIQAQCIPLLLNGDDVLGMAQTGSGKTAAFS
LPFLATMDANLKAPQLLVLAPTRELAIQVADACTEFSKYMKGIKVLALYGGQRYDVQLRA
LKQGPQIVVGTPGRLLDHLNRKTLDLSSLKGLVLDEADEMLRMGFIDDVESIMNAIPEDH
QTALFSATMPAPIRRITKRFMSNPKEVQIKATNQTAPDISQSYWTVRGLRKNDALIRFLE
AEDFDAAIIFVRTKTATLDIAEVLEKNGYNCAALNGDMTQALREQTLDRLRDGRLDILIA
TDVAARGLDVERISLVVNYDIPLDSESYVHRIGRTGRAGRAGRALLFVDNRERRLLRNIE
QIIKKPIPEVELPSKTLLEERRIARFSAKIKQQLESKNLDVYRDILTKLQQEAETDLETL
ATALLKMAQGERLLILPADPVFKPSRDYDRPQRDDRRDRRGDRGGERRDRFDREPEKRRE
RRDVGEMDTYRIEIGRNDGIEVRHIVGAIANEGDISSRYIGHIRLNDDHSTVELPKGMPT
DLLSHFSKVRVLNMPMNMTMLTDSNQSSGGNDRPFREKRSGSKGGDRRSSESSAPRKRSP
RSGDGKSSSGRKPGSSY
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgacaaacgaagtctcttttgttgatctcggtcttcccgaggaaatccttaattcatta
aatgatcttggttttaccaagccatcacctattcaagcgcaatgtatcccattactactc
aatggcgatgatgtattgggtatggcgcaaaccggtagtggtaaaactgcggcattttct
ttaccttttttagcaaccatggacgcgaatttaaaagccccgcagcttttagtgttagcg
ccaactcgagaacttgcgattcaagttgcagatgcctgtactgagttctctaaatatatg
aaaggtattaaagtattagccctttacggtggtcagcgttatgacgttcaattacgtgcg
ttaaaacagggtccacaaattgttgttggtacaccaggtcgattacttgatcatcttaat
cgtaaaacattagatctctcttcattaaaaggccttgtgcttgatgaagcggatgagatg
ttacgtatgggctttattgatgatgtagaaagcattatgaatgcgattcctgaagatcat
caaacggccttattctcggcgacgatgccagcaccaatccgtcgtattactaaacgtttc
atgagtaatccgaaagaagtacaaattaaagcaactaaccaaactgcaccggatattagc
cagagctactggactgtgcgtggtttacgtaaaaatgatgcgttgattcgttttcttgaa
gcagaggattttgatgccgcgattattttcgttagaactaaaacggcaacacttgatatt
gcagaagtgttagagaaaaatggctataactgtgcggctttgaatggcgatatgacacaa
gcactacgtgagcaaacgttagatcgtttacgtgatggtcgtttagatattctgattgca
accgatgtcgcggcgcgaggcttagatgtcgaacgtatcagtttagtggttaactatgat
attccacttgattcagaatcttatgttcaccgtattggtcgtacgggccgtgcgggccgt
gcaggtcgcgcattactgtttgttgataatcgtgagcgccgtttactgcgtaatattgaa
caaattatcaaaaaaccgattccagaagttgagctaccatcaaaaactttactggaagag
cgccgtattgctcgtttttcagcgaaaataaaacagcagctagaaagtaaaaatctggat
gtctatcgtgatattttaactaaattgcaacaggaagctgagaccgatttagaaacgttg
gcgactgcactattgaagatggctcaaggtgaacgcttactgattttacctgcagatcca
gtctttaaaccaagtcgtgactatgaccgtccacagcgtgatgatcgccgtgaccgtcgc
ggtgatagaggtggtgagcgtcgggatcgtttcgatcgtgaacctgagaaacgtcgcgaa
cgtcgcgatgtgggtgaaatggatacctaccgtatagaaatcggtcgtaatgatggtatc
gaagttcgtcacattgttggtgcaattgccaatgaaggtgatatcagtagtcgttacatt
ggtcatatccgtttaaatgatgatcactcaacggttgagctgccaaaagggatgccgact
gatttactgagtcatttttcgaaagtgcgtgtgttaaacatgccaatgaatatgacaatg
ttaacggatagtaaccaaagcagtggtggcaatgatcgtccattccgtgaaaaacgaagt
gggagtaaaggtggtgaccgtcgcagcagcgagagttccgcgccaagaaaaagaagtcca
cgttccggcgatggcaaaagtagttcaggccgcaaaccaggctcatcatattaa
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