Utexia brackfieldae: RHO15_06800
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Entry
RHO15_06800 CDS
T10516
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ubr Utexia brackfieldae
Brite
Enzymes [BR:
ubr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
RHO15_06800 (hrpA)
Messenger RNA biogenesis [BR:
ubr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
RHO15_06800 (hrpA)
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GFIT
Other DBs
NCBI-ProteinID:
WVD63187
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Position
1509221..1513129
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AA seq
1302 aa
AA seq
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MPHQNQLQPFFAKLDTVGLIEKIKLKNRLNLFAKQTVIDSLQWQAFEQQFSAAQQRYQQR
AANCPNITYPQGLPVVDKKAQIYQAIKDHQVVIIAGETGSGKTTQIPKICLELGRGIKGY
IGHTQPRRLAARSVASRIAEELNSELGAVVGYKVRFHDQVGENALIKLMTDGVLLAEIQQ
DKLLRQYDTIIIDEAHERSLNIDFILGYLKQILPKRPDLKVIITSATIDPERFSQHFNDA
PIIEVSGRTYPVEIRYRAVSDVTDQESTDNDQLQAIINAVDELSFESADDILIFLTGERE
IRDVADALTKLNLRHTEILPLYARLSAGEQNRIFQPHNGRHIILATNVAETSLTVPGIKY
VIDTGQARISRYSVRTKVQRLPIEPISQASANQRAGRCGRTSDGICIRLYDEQDFLSRPE
FTQPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRHIQDGIRLLEELNAVEFKRQHY
QLTEVGKALAQLPVDPRLGRMIVEAKKYGCVKELMIVTAALSIQDPRERPLDKQQASDEK
HRRFSDKDSDFMSLINLWRYLQTQQAELSSNQFRKLCKQEYLNYLRVREWQDIYTQLRQT
VKELKFAINSQEGDYTSIHLALLSGLLSHVGMKEVDKHEFIGARNIKFSIFPNSGIFKKP
PKWCLVAELVETTRLWGRIAAKIEPEWIEPLAQHLIKRSYSEPHWSKAQGTTMANEKVTL
FGLPIVNQRQVNYSQIDPVLSRELFIRHALVEGDWQTKHAFYKKNLSLIHDVETLEHKSR
RKDILVDDHTLYAFYDERLPANIVSSRHFDTWWNSLKSQQPDLLNFEKIMLINESANQIS
RLDYPDYWQQGNLKLPLSYQFEPGSQADGVTVQVPLAVLNQLSEQGFEWQIPGLRKDLII
ALIKSLPKPIRRNFVPAPDYAQAFLERVTALSLPLLEALEKEFRRMSGLTIDRESWQWTQ
VPDYLKITFRVIDLQGKILAESKDLTHLKQSLKQQVQQTLSSVVQDEKLAQRDLVDWHFG
TLPTVFQDKKGQYTVKAYPALVDNQQSVSIKLVDTIEEQQRLTLVGIRRLLLLNSPSPIK
YLHEKLPNKSKLGLYFNPFGNIPELIDDCIACAIDHLIIEQGGLVWNQQDFARLLDFVKA
NLNPLVVEIAQQVEKILTLNFNINKKLKGRIDLSLAFALSDIKAQLSHLVYKGFVTKVGY
SRLGDIYRYLQAIEKRLDKLAIDPNKDRAHIHKIEQVQQAYQQFMVKLPDEKRQLKEVND
IGWMIEELRVNLFAQQLGTPYPISDKRIVQQIDNLTKILEAQ
NT seq
3909 nt
NT seq
+upstream
nt +downstream
nt
atgccacatcaaaaccaattacaaccattttttgcaaagcttgacactgttgggctgatt
gaaaaaatcaaattaaaaaacagacttaatctgtttgccaaacaaacggtcattgattcc
cttcaatggcaagcctttgaacagcaattttcggcagctcagcaacgctatcagcagcgg
gcagccaactgtccgaatatcacttatccgcaaggcttaccggttgttgataaaaaagcg
caaatctatcaggctatcaaggaccatcaagtcgtgattattgctggtgaaacaggctca
gggaaaacaacccaaatcccgaaaatttgtcttgagttagggcgggggataaaaggctat
atcggccatactcagccacgccggctagccgccagatccgttgccagccgaatcgcggaa
gaacttaacagtgagctgggtgcggtcgtcggttataaagtccgttttcacgatcaagtt
ggcgagaatgccctgattaagttaatgactgatggggtcttgctggcggaaatccaacaa
gataaattgttgcgccagtacgataccataattatcgatgaagcacatgagcgtagtctg
aatatcgattttattctcggctatctgaaacaaattttaccgaaaagaccagatttgaag
gtcatcatcacctcagcaactattgatccagaaagattctcgcaacattttaatgatgcg
ccgattattgaggtctctggacgaacctatccggttgagattcgttatcgcgcggtaagc
gatgtaaccgatcaagagagtaccgataatgatcagttacaagccattattaatgcggtt
gatgagctctctttcgaatctgccgatgatattttaattttcttaactggtgaacgagag
attcgcgatgtggctgatgcgctcaccaaactcaatttacgtcataccgagattctgccg
ctgtatgcgcgcttatccgccggtgaacagaaccgtatttttcagccccataacggccgg
catattatcttagctactaatgtggcggaaacctcattgaccgtgcctggcattaaatat
gtcatcgataccggacaggcgcgtattagccgctatagtgtgcgaaccaaagtgcagcgg
ttacccatcgaacccatttcacaagcctcggctaatcaacgggctggacgctgtggtcga
acgtcggatgggatctgtattcggctttatgatgagcaggacttcttatcgcgtcctgaa
tttacgcagccagaaattctcagaaccaatttagcttcggtcattttacaaatgacggcg
ttaggtttaggggatatcgctgcttttccctttgttgaggcgccggataaaagacatatt
caagatggtatccgattattagaagagctgaatgcggttgagtttaagcgtcagcattat
caattaactgaagtgggtaaagctctggctcagctaccggttgatccgcgcttaggccgg
atgattgttgaagctaaaaaatatggttgtgtgaaagagctgatgattgttaccgccgct
ttatctattcaagatccacgtgaaagaccactcgataagcagcaagcttccgatgaaaag
catcgtcggtttagtgataaagattctgattttatgagcttgattaatttatggcgttat
ctgcaaacgcagcaagcagagctctcgagtaaccaatttcgaaaactgtgtaagcaagag
tatcttaactatttgcgggtcagagagtggcaggatatctatactcagctgcgtcaaacg
gtgaaagagcttaagtttgcgattaatagtcaggagggggattacacgtcgattcatctg
gctcttctcagtggcttactttcccatgttgggatgaaagaggttgataaacatgagttt
attggtgcgcgcaatatcaaattttcgatctttcccaactcagggatctttaaaaaacca
ccgaaatggtgtttagtggctgaattagttgaaacaacccgcttatggggacggattgcg
gctaaaattgaaccggaatggatagagccgctcgcgcagcacttaataaaacgcagttat
agtgaaccgcactggtcgaaagcgcaagggaccactatggccaatgagaaggtcaccttg
tttggcttaccgattgtcaatcaaagacaggtcaattatagtcaaatcgatccagtatta
agtcgtgagctgtttatccggcatgcgctggttgagggcgactggcagaccaaacatgct
ttttataaaaagaatctcagtttgattcatgatgtggagaccttagaacataaatcacga
cgtaaagatatattagtcgatgatcatacgctgtatgctttttatgatgagcgtcttcca
gcgaatattgtttcctctagacattttgatacctggtggaacagtctaaagtcacagcag
ccagatttgcttaactttgaaaaaattatgttgatcaatgagtcggccaatcaaattagc
cgtctggattatcctgattattggcaacaaggcaatttaaaactaccactatcctatcaa
tttgaaccgggtagccaggcggatggtgttacggtgcaggtacctttagcggtattaaac
cagttgagtgaacagggctttgagtggcagataccgggcttacgcaaagatctaattatc
gcgttgattaaatcgttacccaagccgatccgtcgtaactttgttcccgctcctgattat
gcacaggcctttctggaaagagttaccgctctcagcttaccgctactggaagccttagaa
aaagagtttcggcgtatgagtggtctgacgattgaccgagagagctggcagtggacgcaa
gtgcctgattacttaaaaatcaccttccgggtgattgatttgcagggaaaaatcttagct
gaaagcaaagatctcacgcatttgaagcagtccttaaaacagcaggttcagcaaacttta
tccagtgtcgtgcaggatgaaaaactggcgcaacgtgatttagttgactggcattttggc
actttaccgacggtgtttcaagataaaaaaggtcaatatacggtcaaagcttatcctgct
ttagtggataatcaacaatccgtcagtatcaaacttgttgatactatagaggagcagcag
cgtctgaccttagtgggaatacgtcgtttattgctgttaaacagtccttcgccaattaag
tatttacatgaaaaactacccaataaatcaaaactgggcctctattttaatccctttggt
aacattcctgaactgattgatgactgtattgcttgtgcgattgatcatctgatcattgaa
cagggcggtctggtctggaatcagcaggactttgcacgtttactcgattttgttaaagcc
aatctcaatccgctggtggttgagattgcccagcaagtcgaaaaaatattaacgctaaac
ttcaatattaacaagaagctaaaaggtcgaatagacttatcgttagcctttgccttatcg
gatatcaaggcgcagctcagtcatttagtctataaagggtttgtcaccaaagtgggctat
agccgattgggcgatatctaccgttatctgcaggcgattgaaaaacggttagataagctg
gcaattgatcccaataaggatagggcgcatatacataaaattgagcaagttcaacaagct
tatcagcaatttatggtgaaactacctgacgaaaaacgtcaattaaaagaggtcaatgat
atcggctggatgattgaagagttgcgggtaaatctttttgctcagcagctaggcacccct
tatccgatttcagataaacgtattgttcaacaaatcgataatctgaccaaaatactcgaa
gcacaataa
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