Utexia brackfieldae: RHO15_07245
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Entry
RHO15_07245 CDS
T10516
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ubr Utexia brackfieldae
Pathway
ubr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ubr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RHO15_07245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ubr03019
]
RHO15_07245
Enzymes [BR:
ubr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RHO15_07245
Messenger RNA biogenesis [BR:
ubr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RHO15_07245
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WVD63273
LinkDB
All DBs
Position
complement(1608307..1609728)
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AA seq
473 aa
AA seq
DB search
MSFDFLSLNAEILKALQEQNITSPTPIQAQAIPLVLAGHDLMASAQTGTGKTAGFALPIL
QQLTEIKKQAAQKPETKKGKCQLHALILAPTRELAAQIGDNIRDYSRYLSIRSLVVFGGV
SINPQMMKLRGGVDILIATPGRLLDLVQKNAVDLSTVKTLVLDEADRMLDMGFIHDIRRI
ITKLPKQRQNLMFSATFSDEIKALAKSILVLPQSVAVARTNSASEQIAQLVHRVDKQRKR
ELLSYLIGKGQWQQVLIFTRTKYGANHLAEQLTKDGIKAAAIHGNKSQGARTKALADFKS
GQITALVATDIAARGIDIELLPHVVNYELPQVAEDYVHRIGRTGRAQNTGQAISLVCVDE
LPQLKAIEKLLKMEIPEMMTEGFAVNPAIKASPKAAPVKKTSSRPARSGNASCGRGQAVS
KTLNSNSTWAQAHSSSNNGNGHNTGNKNRSSQSAPSRRSGQNRSRLQTTRHEG
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgactttcttagcttaaatgctgagatattaaaagcgcttcaagaacaaaat
attacttcaccaacaccgattcaggcacaagcgataccactggtattagctggtcacgat
ctgatggcgagtgcgcaaacgggcaccggcaaaaccgctggatttgctttgccgatttta
cagcaactgaccgagataaagaaacaagccgctcaaaagcctgagacgaaaaaaggcaaa
tgtcagctgcatgctttaattttagcgccgacccgcgaacttgcggcacaaattggtgac
aacattcgtgattatagccgttatttatcgattcgctcgttagtggtttttggtggcgtc
agtatcaatccacagatgatgaaactccgtggtggcgttgatattctgattgcgaccccg
ggccggctacttgatttagtgcaaaaaaatgcggtcgatttatctaccgtcaaaacattg
gtattagatgaagccgatcgaatgttagatatgggctttattcatgatatccgccgtatt
atcactaagctgccgaagcaacgccaaaatttgatgttttcagccacgttctccgatgag
attaaagcgttagctaaatccattttagttttaccgcagtcggtggctgtggccagaacc
aatagtgcttcagaacagattgctcagttagtccatcgggtggataaacaacgtaaacgc
gagctactctcgtatttgattggtaaaggtcaatggcaacaagtgttgatttttactcgg
accaaatatggtgccaaccatctagccgagcagctgaccaaagatggtattaaagccgcg
gctattcatggcaataaaagccaaggcgctcgtaccaaagcgttagccgatttcaaaagt
ggtcaaattaccgcactggttgcgacagatattgcggcccgcggcattgatatcgaactg
ctaccccatgtggtcaactatgaactgccgcaagtggccgaagattatgtacaccgtatt
ggtcgtactggccgagctcagaataccgggcaggcgatatcgttagtgtgtgttgacgag
ctgccacagctgaaagcgattgagaagttgctgaaaatggagattccggagatgatgacg
gaaggttttgccgtcaatccggctatcaaagcctctccgaaagccgcgccagttaaaaaa
accagcagccgtcctgcccgcagcggcaatgcgtcttgtggacgaggtcaggccgtaagt
aaaacgctaaatagtaacagcacttgggcacaggcacattcgtcaagcaacaatggcaat
ggtcacaataccggcaataaaaaccgtagtagtcagtcggctccttcgcgccgcagtgga
cagaatcgttcacgtctacaaacgactcgccacgagggatag
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