Utexia brackfieldae: RHO15_09320
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Entry
RHO15_09320 CDS
T10516
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ubr Utexia brackfieldae
Pathway
ubr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ubr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RHO15_09320 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ubr03021
]
RHO15_09320 (rho)
03019 Messenger RNA biogenesis [BR:
ubr03019
]
RHO15_09320 (rho)
Transcription machinery [BR:
ubr03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
RHO15_09320 (rho)
Messenger RNA biogenesis [BR:
ubr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
RHO15_09320 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA
S1CSD-TOTE-2
AAA_25
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WVD63659
LinkDB
All DBs
Position
complement(2068644..2069906)
Genome browser
AA seq
420 aa
AA seq
DB search
MNLTELKNKPVSELVTLGEKTMGLENLARLRKQDIIFSILKQHAKSGEDIFGDGVLEILQ
DGFGFLRSSDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEV
NHDKPEDARNKILFENLTPLHANIRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAP
PKAGKTMLLQNIAQSIAFNYPECELMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRH
VQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKILTGGVDANALHRPKR
FFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAID
FNRSGTRKEELMTSPDELQKMWILRKILHPMGEIEAMEFLIGKLAMTKTNEEFFDMMKRS
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttactgaattaaaaaacaaaccggtttctgaattagtcaccttaggtgaaaaa
acaatggggctggaaaatttagcccgcttaagaaaacaggatattatcttctctatcctc
aaacaacatgcaaaaagtggcgaagatatttttggtgatggcgtgttagagatattgcaa
gatggatttggttttcttcgctcttctgatagctcatatcttgctggtcctgatgatatc
tatgtatctccaagtcaaattcgtcgtttcaaccttcgtaccggtgatactatttccggt
aaaattagaccaccaaaagagggtgagcgttatttcgcattattaaaagttaacgaagtt
aatcacgataagcccgaagatgcgcgtaacaaaattctatttgaaaatctcacgccactc
catgctaatattcgcttaagaatggaacgaggcaatggttcaaccgaggacttaactgct
cgcgtattagatttagcttcaccgattggtcgaggccagcgtggtttaatcgtcgcgccg
ccaaaagccggtaaaacgatgttgctacaaaatatcgcgcaaagcattgcgtttaattac
cctgaatgtgaattaatggtgttattaattgatgagcgtccagaagaagtcaccgaaatg
cagcgtctggtgaaaggtgaggtgattgcttctacgtttgatgaacccgcttctcgtcat
gtccaggtcgctgaaatggtgattgaaaaagccaagcgtctcgttgagcataaaaaagat
gtgatcattttgctcgattcaattacccgtttagcacgtgcttataatactgtcgttcct
gcttcaggtaaaattctaaccggtggtgtggatgcgaatgcactacatagaccaaaacgc
ttttttggtgcagcgcgtaatgttgaagagggcggcagcttaacgattattgctactgca
ttagtcgatacaggttcaaaaatggatgaagtgatttatgaggagtttaaaggtaccggt
aatatggaacttcatctttctcgtaaaattgctgaaaaacgtgtatttccggcgattgac
tttaatcgttctggtactcgtaaagaagagttgatgacttctcctgatgagttacaaaaa
atgtggatcttacgtaaaattctccatcctatgggtgagattgaagcaatggaattctta
attggtaaattggcaatgaccaaaaccaacgaagagttttttgatatgatgaaacgttct
taa
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