Undibacterium cyanobacteriorum: RF679_01920
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Entry
RF679_01920 CDS
T10254
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ucy Undibacterium cyanobacteriorum
Pathway
ucy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ucy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RF679_01920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ucy03019
]
RF679_01920
03009 Ribosome biogenesis [BR:
ucy03009
]
RF679_01920
Enzymes [BR:
ucy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RF679_01920
Messenger RNA biogenesis [BR:
ucy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RF679_01920
Ribosome biogenesis [BR:
ucy03009
]
Prokaryotic type
rRNA helicases
RF679_01920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
DbpA
Helicase_C
ResIII
CMS1
UvrA_inter
HEM4
Motif
Other DBs
NCBI-ProteinID:
WMW81051
LinkDB
All DBs
Position
complement(469453..471816)
Genome browser
AA seq
787 aa
AA seq
DB search
MSTTTPSSDISFADLRLSDALLRALSEVGYESPSPIQAATIPHLIDQRDVLGQAQTGTGK
TAAFALPILANIDLLLSKPQALVLAPTRELAIQVAEAFQTYARYLPGFHVMPIYGGQSYG
PQLSALRRGVHVVVGTPGRVIDHLDKGSLDLSELKTLVLDEADEMLRMGFIDDVERILQE
TPESRQTALFSATMPAPIKRIAQTYLNEPAEVSIAAKTGTAANIRQRYWLVSGMHKLDAL
TRILEAEPFDGMIIFARTKLGTEELADRLSARGFSVAAINGDIQQVQRERTIQQLKDGKI
DILVATDVAARGLDVERISHVVNYDVPYDPESYTHRIGRTGRAGRSGEAILFITPREKNL
LKIIERATRQPVSPMELPTIQTVNNVRIARFKEQITSTLAAGELEHYLQVIEEYEQEHNV
PALEIAAALAKMARGDEPLLLEKKKRETKSYDEQDSFEDKRRSKRGDDFEPRARREHSPR
IAEEGMRTYRIAVGHQHGVKPGNIVGAIANEANIESRFIGRIDIYDDYSVLDLPDNLDGD
TIEQLKGVRVAGQALKIRAENSSGAEAAPARDQRHFLTASSESKPTRSVPRDAVEKPRKK
TSREDESPLLEVVEKASKAAFAETGKATKEKATDKKRDANKGKVGIPMQTYRIEVGKNDG
ITPGNIVGAIANEAGLDSKFIGHIGLFEDHATVDLPTGMPKEILAHLKGVWVGGKKLDMK
EIGSSTLMVNAHSSMPLELKERVSGGNRRIAEKEKKASGGAGKKPVTARGGSSDRFASNK
KPGRGRL
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgtctacgaccacaccatcgagtgatatcagttttgccgacctccgtttaagcgatgca
ctactacgtgcactcagcgaggtgggttacgaatcaccatcgcccatccaagctgccact
atcccacacttgatcgaccaacgtgacgtcttgggacaagcgcaaacaggtaccggtaaa
accgctgctttcgctttacccatcttagccaatatcgatttgctcctctccaaaccgcaa
gctttggtgcttgcaccgacgcgcgaattagcgatccaggtggctgaggcatttcaaacc
tatgcacgttatttgcctggctttcatgtgatgccaatttacggtggtcaaagttatggg
ccgcaattgtcggcgctacggcgcggcgtccatgttgtggtgggtaccccaggacgcgtg
atcgatcatctcgacaaaggttcgctcgatctctctgaattgaaaaccttggtactcgat
gaagccgatgaaatgctgcgcatgggttttattgatgatgtcgaacgcattctgcaagag
acgccagagtctcggcaaactgcgctgttctcggccaccatgccagccccgatcaaacgg
attgcacagacctatctgaacgagccagccgaagtcagcatcgctgccaaaaccggcacg
gctgccaatattcgtcaacgctattggttagtcagcggcatgcacaagctcgatgcatta
acacgtattttggaagcggaaccttttgacggcatgatcattttcgcccgcaccaaactg
ggcaccgaggaattagccgatcgtctctccgcgcgcggattctcagtggctgcgatcaat
ggagatatccagcaggtacaacgtgaacgcaccattcaacaactcaaagacggcaagatc
gacatcttagtggcgactgatgtcgcggcacgtggtttggatgtggaacgcatcagccat
gtggtcaattatgatgtcccttacgatccagaaagctacacacatcgcattggccgcact
ggtcgtgctgggcgcagcggcgaagcgattctgttcattacgccgcgcgaaaagaatctc
ctcaaaattattgaacgagcgacgcgtcaaccagtgtcgccaatggagctgccgacgatt
caaaccgtcaacaacgtacgtatcgctcgcttcaaggagcaaatcacgtcgactttggca
gcgggtgagctcgaacactacttgcaagtgatcgaagagtacgaacaagaacacaatgta
cctgcacttgaaatcgctgcagccttggccaaaatggcccgtggcgatgagccactctta
ctggagaagaagaagcgcgaaaccaagtcgtacgacgaacaagatagcttcgaagataaa
cgtcgcagtaaacgtggtgacgattttgaaccacgtgctcgccgcgaacacagtccacgc
attgccgaggaaggcatgcgtacctaccgcatcgcggtcggccatcagcacggcgtcaaa
cccggcaatattgtcggtgccatcgccaatgaagcgaatatcgaatcacgctttatcggg
cgcatcgatatctatgatgattacagtgtgttggacctacccgacaatctcgacggcgac
actatcgaacaattgaagggcgtgcgtgtcgctggacaagctttgaagatacgcgcagaa
aattcatcaggtgcagaagcggcaccggcgcgcgatcaacgtcacttcctcacggcatca
agcgaaagcaaacctacaagatctgtgcctcgcgatgcagttgaaaaacctaggaaaaaa
acgagccgtgaagatgaaagcccgctgctcgaagtcgttgaaaaagcgagtaaagccgct
ttcgctgaaacaggaaaagcaaccaaggaaaaagccaccgacaagaaacgtgacgccaac
aagggtaaggtcggcattcctatgcaaacttatcgtatcgaagttggtaaaaacgatggc
attacaccaggtaatatcgtcggcgccatcgctaatgaagcgggactcgattccaagttt
atcggccatatcggactgttcgaagaccatgcgacggttgatttaccgaccggcatgcca
aaagaaattttggcgcatctgaaaggcgtttgggtcggcggtaaaaagctcgacatgaaa
gagatcggcagtagtactttgatggtcaatgcgcattcctccatgccgctcgaattgaaa
gaacgtgtgagtggcggcaatcgacgcattgctgagaaggagaaaaaggcgagtggaggt
gcgggtaaaaaaccagtaacggcacgtggcggttccagcgaccgctttgccagcaacaaa
aaaccgggccgcgggcgcttataa
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