Undibacterium cyanobacteriorum: RF679_02825
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Entry
RF679_02825 CDS
T10254
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
ucy Undibacterium cyanobacteriorum
Pathway
ucy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ucy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
RF679_02825 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ucy03400
]
RF679_02825 (sbcB)
Enzymes [BR:
ucy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
RF679_02825 (sbcB)
DNA repair and recombination proteins [BR:
ucy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
RF679_02825 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
RF679_02825 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RF679_02825 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
LEDGF
TraC
Motif
Other DBs
NCBI-ProteinID:
WMW81231
LinkDB
All DBs
Position
complement(684516..685955)
Genome browser
AA seq
479 aa
AA seq
DB search
MHSFLWHDYETFGAVARRDRPAQFAAVRTDADLNELGEPINIFCRPANDYLPDPQSCLIT
HITPQQCLEQGLPEYQFAAQIEQALSASGTIGVGYNTIRFDDEVTRFLFWRNLIDPYARE
WQNQCGRWDIMDMLRTCYALRPDGIVWPLNDEGKPSFRLEHLTAANGISHESAHDALSDV
RATVALARLVKQKQPRLFDFCFSLHKKDKVAQELGVPLLGKAFLHVSGMFPTNHGCLAIM
WPLAVHPKNKNEIIAWDLRYDPEELVGLSIATIQERLFSKISELAERVTRLPIKSVHLNK
SPIVIGNLKTLSAEMAARWQIDVEQAHNHAQKAAQLQDQAALPNELWDAVFGRSQESTND
VDEDLYGGFLGPGDRRLLNELRSYNAADLIKANPHFQDERLDELFFRYKARNFAEHLNEE
EALRWEEHRYSRLIEGAGNARNVDAYFDQIDQLSETADEVEQDILGALYDYAEMIVPVR
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgcatagttttctttggcacgattacgagactttcggcgcggtggcgcgtcgcgatcga
cctgctcaatttgcagcggtgcgcacggatgctgacttgaacgaacttggtgaacccatc
aatattttctgtcgccctgccaacgactatttgcccgatccacaatcgtgcctgatcacg
cacatcacaccacagcaatgcttggaacaaggtctgccagagtaccaattcgctgcacaa
atcgaacaagccttaagcgcaagcggcaccatcggtgtcggctacaacacgatacgcttt
gatgatgaagtcacacgctttttattttggcgcaatctgatcgatccatacgcacgcgag
tggcagaatcaatgtggccgctgggacatcatggatatgctgcgcacttgctatgccttg
cgtcccgacggcatcgtgtggccactcaatgatgaagggaagccgagctttcgcctggaa
catttaacggctgccaatggcatttcccacgaaagtgcacatgatgcgctatccgacgtc
agagcaaccgtggccttagcgcgtttggtcaaacaaaagcagcctcgtctgttcgacttt
tgtttttcgctgcacaaaaaagataaagtcgcgcaagaattaggcgtaccactattgggc
aaagcgtttctgcatgtatcaggcatgttcccaaccaaccatggctgcttagcgatcatg
tggccgctggcagtgcatcctaagaataagaatgaaatcatcgcgtgggatctgcgttac
gatcccgaagagctggtcggcctctcgatagcgaccatacaagaacgactctttagtaaa
ataagtgagcttgccgaacgcgtgacgcgcttaccgatcaagagcgtccatctaaacaaa
tcaccaatcgtgataggtaatctcaagaccttgagcgcggagatggctgcacgttggcaa
atcgatgtagaacaagctcataatcacgcgcaaaaggcggcccaattacaagatcaagca
gcgttgccaaatgagctgtgggatgccgtttttggcagatcgcaagagagcaccaacgac
gtggatgaggatttatatggcggcttcttaggtcctggtgaccgacgtcttttgaacgaa
ctaagaagctacaatgcggctgaccttatcaaagccaatccgcatttccaagacgaacga
ctagacgaacttttcttccgttacaaagcacgtaattttgctgagcacttaaatgaggaa
gaggcactgcgctgggaagagcatcgatactctcgcctaattgaaggtgcagggaatgcg
cgcaacgtcgatgcgtactttgatcaaatcgaccagctctccgaaaccgcagatgaagtt
gaacaagacatcctcggtgccttatacgattacgctgagatgattgtaccggtgcgctaa
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