Undibacterium cyanobacteriorum: RF679_07475
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Entry
RF679_07475 CDS
T10254
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
ucy Undibacterium cyanobacteriorum
Brite
KEGG Orthology (KO) [BR:
ucy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ucy03400
]
RF679_07475
Enzymes [BR:
ucy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RF679_07475
DNA repair and recombination proteins [BR:
ucy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
RF679_07475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WMW82115
UniProt:
A0ABY9RLM2
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All DBs
Position
1812396..1816214
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AA seq
1272 aa
AA seq
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MSFEPNDMNASNSASNVGQPVASVAKAYECNGQAIDAMNFTRSACDPSLSVVVEACAGSG
KTWLLVARMLRLLLSGAEPSELLAITFTRKAAQEMRHRLMELLRELALSDHAQASQILID
RGVSETEVEANLVRARGLYESLLNHPQGLAMDTFHSWFGRLLQLAPLASGVPQGFQLLEA
TGQLQREAWRQLLNRVGLAEKENEADEGIGNISGRREHATENQGRGESSSGTQIRQAMLF
LFDALGDHSTKQLLDAFLAKRAEWWAISCEHSQVPDAQLVLDHLEDVLGEDAHRDARLQL
WDDQALLQEIAQFARCLGKGGSLNQERARQLETLVTTAQQMQSQGEVPGLELFAALANEF
YDDKGAPRRNGKVKSFVAALTEHFGAGVGDPLEAFNAAFNRVAAVIQDYARRAQEIDVLQ
INRALFLVGQAYLDEYQDIKAAQGALDFSDLEWQAYRLLSREEFAAYLLGRLDARYKHIL
LDEFQDTNPLQWNIVRSWLDAYGADHQRPTVFVVGDPKQSIYRFRRADPRVFMAAQEMLA
QQGAIVLKTNQTRRNAPVVIEALNRAMYSNQLYSPQTTLSAQDGSVLRLPLVKDVEEAGV
GDQDQVSGQDENQDENQDNKQDQDSAPSDAIRRPLTTPAEESENLSRYQEGQQVARLLCE
LKQQHQLQQKVSQEQGRDGSDWRWSDVMLLVRRRSYLSSYERALREVGIPFVSNRRGGLL
QTLEIMDLMALLNFLMTPSDNRALAHILKSPIFACSDGDLMMLAMRGEATWWQRLSASLS
ASVHEASDAVESVSEQLAQQQHSQHPQLVRAHDLLQKWMQAAHDLPVHDLLDTILHQGDV
LARYAELNSASERDQVRGNILGFVELALNLDGGRYPSLPKFIASIAEYDKLAENESPDES
NVVSGLDAVQILTIHSAKGLEAKIVVMLDANHSDASDDHVGVLCAWPLRDGEAKHFSIFG
RRDQRGKARDALFKAEADQASQENLNLLYVAVTRAKQMLVISGVANAKKSDGEVPGLTEG
SWYQAFMEIPEVSLIADTVVGEGAAKSAAGFSLEQATQFEFEDFTPPNLALPISAGQTVA
SSTDYVRQFEDGLARDAFANDTSNSDATRTDQPSEAQVEGIALHALMERMTANPATASWS
EIMPSAEVIAQWLPCPSPIASVVRKQALSILQSPALTAFFDRSRLTVARNEMDIIFAGQL
LRLDRLVVFRANDPQYADEVWILDYKRQLLASERADYQAQLATYRQAVAAVYPHRKIRSA
LILTDGCLHEFG
NT seq
3819 nt
NT seq
+upstream
nt +downstream
nt
atgagcttcgaacccaatgacatgaatgcgtccaactcagcttcgaatgtggggcaacca
gtagcaagcgtcgccaaagcctacgaatgcaacggtcaagcgattgatgccatgaatttt
acgcgttccgcttgcgatccgagtctatcggtggtggtggaggcctgcgctggtagcggt
aaaacttggttgttggtcgcacgtatgttgcgtttgcttttatcaggtgcggagccctcg
gaattattggcgattacgttcacccgaaaagcggcgcaagagatgcgtcatcgtctaatg
gagttgctgcgcgagttagccttgtctgatcacgcgcaagcgagtcaaatattgatcgat
cgtggtgtgtcagaaaccgaggtggaagcgaatttagtgcgggcgcgtggtctctatgaa
agtctactgaatcatcctcaaggcctcgcgatggataccttccatagttggtttgggcgc
ttacttcaactcgcgcctttggcctcgggtgtgccgcagggcttccagttactcgaagcg
acaggccagttgcaacgtgaagcatggcggcaattgttgaatcgtgtagggctggctgaa
aaagagaatgaggctgatgaaggcataggtaatatcagtggtcgacgtgagcatgctaca
gaaaaccaagggcgaggggaatcttcatcgggaacacaaattcgacaagccatgctgttc
ttgttcgatgcactcggcgaccattcgaccaaacaattattagatgctttcctggccaaa
cgtgccgaatggtgggcgattagttgtgaacatagtcaagtacccgatgcacaattagtg
ctcgatcatttagaagatgtacttggcgaagatgcgcatcgcgacgcacgtttgcagctg
tgggacgatcaagccttgctgcaagaaatcgcgcagtttgcgcgatgcttgggaaaaggc
ggttccctcaatcaagagcgggctcggcaacttgaaacgctggtcaccacggcacagcaa
atgcaatctcagggtgaggttcctggcctggaactttttgcagccttggccaacgaattc
tacgatgacaaaggcgcaccgcgtagaaacggtaaggtcaaaagctttgtcgccgcatta
acagaacattttggcgctggtgtcggtgatccattagaagcctttaatgcagcctttaat
cgtgtcgcggccgtgattcaagattacgcacggcgagcccaagaaatcgatgtgttgcag
attaatcgagccttattcctcgttggtcaggcttatctcgatgaatatcaagatatcaaa
gcggcgcagggcgcgctcgacttttctgacttggaatggcaagcctatcgcttgttgagt
cgggaagaatttgcagcctatttgctcggtcgcctcgatgcacgttataaacatatcttg
ctcgacgaatttcaagatactaatcctttgcaatggaatatcgtacgttcttggctggac
gcttacggcgcagatcaccaacgtccgaccgtatttgtggtgggcgatcctaagcaatcg
atctatcgttttcgtcgcgccgatccacgcgtctttatggcagcacaagaaatgttggcg
caacagggcgcgatcgtgctgaagacgaatcagacgcgtcgtaatgcaccggtggtgatt
gaagcactgaatcgggcgatgtatagtaatcagttgtattcgccgcagacgactttgtcg
gcgcaagatggctcggtactacgtttgccgctggtgaaggatgttgaagaggctggcgtc
ggcgatcaggatcaagtgagcggacaggacgagaatcaagacgagaatcaagacaataag
caagaccaagatagtgcaccatcagacgcgattcggcgtccgctcacgacaccagcggaa
gagagtgaaaatctcagtcgttatcaagaagggcagcaagtcgcgcgtttattgtgcgag
ctgaaacaacagcatcagctacagcaaaaagtgtcccaagagcagggacgagatggctct
gattggcgttggtccgatgtgatgttattggtgcgccggcgttcttatttgtcgtcgtat
gaacgtgctttgcgcgaagtcggaatcccatttgtatcgaaccgccgaggcggtttgctg
cagactttggaaatcatggatctgatggcgctgctcaatttcttgatgacacccagtgat
aatcgtgctttagcgcatattttaaaatcgcctatctttgcttgcagcgacggcgatttg
atgatgcttgctatgcgcggcgaggctacgtggtggcaacgtctcagtgcaagcctcagt
gcaagcgttcatgaagcgagtgatgccgtagaatcggtatcagaacagctagctcaacaa
cagcattcgcaacatccgcaactcgtacgcgcgcacgatttgctacagaagtggatgcag
gcggcccatgatttaccagtccacgatctgctggatacgatactgcatcaaggcgatgtg
ttggcgcgttacgcggagttgaattctgccagcgagcgtgaccaagttcgcggcaacatc
ttaggttttgttgagcttgcattgaatctcgatggtggccgttatcctagtttgccgaaa
ttcatcgccagcatcgctgagtacgacaagctagccgagaacgagtcacccgatgaatcg
aacgtcgtgagcggcctcgatgcggtgcagattttgaccatccatagtgccaaaggctta
gaggccaagattgtcgtgatgcttgatgcgaatcatagcgatgcaagtgatgatcatgtt
ggcgttctgtgtgcatggcctttgcgcgatggagaggctaaacacttttcgattttcggt
cgtcgtgaccaacgtggcaaagcacgtgatgcattattcaaagccgaagcagatcaagcg
agtcaagaaaatctgaacttgctctatgtggcggtgacgcgggcgaagcagatgttggtg
atcagcggtgttgctaacgccaaaaagagcgacggcgaagtgcctggtctcacggaaggt
agttggtatcaagcctttatggaaattccggaagtctctttgatcgctgataccgtagtg
ggagagggagcagcaaagtctgcggctggctttagcttagagcaggcaacacagtttgaa
ttcgaagatttcactccaccgaatttagcactgccgatatctgcggggcagactgtcgcc
agctcgacagattacgtgcgacaatttgaagatggtctggcacgagatgcgtttgcaaat
gacacatcaaactcagacgcaacgcgaaccgatcaaccaagtgaagcgcaggtcgagggc
atcgcactgcacgctctgatggagcgcatgacggcgaacccagcaacggcttcatggagc
gagatcatgccaagcgccgaagtcattgcacagtggttaccgtgtccatcgccaatcgcg
agcgtcgtcagaaaacaagccttgagcattttgcagagcccagctttgacagcctttttt
gatcgtagtcgtctgacagtggcacgcaatgagatggatattatcttcgccggacaatta
ttgcgtctcgatcgattggtggtttttcgtgcgaatgatcctcagtatgcggatgaagtg
tggatcttagattacaaacgccaacttctagcctccgaacgggccgactatcaagctcaa
ctcgctacctaccgccaagcggtggccgcggtctatccccatcgcaagattcgtagcgcg
ctgatactaaccgatggttgtttgcatgagtttggttga
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