Undibacterium cyanobacteriorum: RF679_10445
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Entry
RF679_10445 CDS
T10254
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
ucy Undibacterium cyanobacteriorum
Brite
KEGG Orthology (KO) [BR:
ucy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ucy03009
]
RF679_10445 (rlmD)
Enzymes [BR:
ucy01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
RF679_10445 (rlmD)
Ribosome biogenesis [BR:
ucy03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
RF679_10445 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRM5-TYW2_MTfase
RrnaAD
Methyltransf_15
PCMT
Methyltrans_SAM
MTS
TRAM
Methyltr_RsmB-F
Cons_hypoth95
Methyltransf_32
Methyltransf_11
CMAS
Methyltransf_23
UPF0020
PrmA
Motif
Other DBs
NCBI-ProteinID:
WMW79080
LinkDB
All DBs
Position
complement(2484010..2485344)
Genome browser
AA seq
444 aa
AA seq
DB search
MNTINIRSLDMDARGVGHLENEDGSPGKVVFVEGALPGETVGFNPYKKKASWEAATLGPI
VKESSQRIKPRCPHFGVCGGCSMQHLEPNAQVAMKQRVLEDNLGHIGKVKPEMVMRPIYG
PTWGYRYRARLSVRNVHKKGIVLVGFHEKKSRYVANMETCDILPAHVSAMLMPLRELIAS
LTIIEALPQIELAIGEGVTAMVLRIMQPLGPGDAEKLKAFADQFQVQWWLQTAGPDSAEP
YYPAQSDLHYLLPEFGVKMPFKPTDFTQVNHHINRVLVARALGLLDVQKGERILDLFCGL
GNFTLPIATLAREVVGIEGSTALTERAMENAKANGLDHKLSFATRNLFEAKAEDFVALGK
FDRFLVDPPRDGAMAVCQALIDLGKLAPELRPKRIVYVSCSPGTLARDAGMLVNEAGYVM
RKAGVVNMFPHTSHVESMAVFDLP
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgaatacaattaatatccgttccctcgatatggacgcgcgcggcgttggccatttggaa
aatgaagacggctcacctggaaaagtagtctttgtcgaaggtgcgttgcccggcgaaact
gtgggctttaacccttacaagaagaaagcgagctgggaagccgctactttaggccctatc
gttaaagaatcctcgcaacgcatcaagccgcgatgcccgcacttcggtgtttgtggtggc
tgttctatgcaacatctagagccgaatgcgcaagtggcaatgaagcagcgcgtgctagaa
gataaccttggacatatcggcaaggttaagccagaaatggtgatgcgcccaatctatggg
ccgacctggggctatcgttatcgcgcgcgtttatcagtgcgtaacgtccataaaaaaggc
atcgtcttggttggtttccacgagaagaaatcacgttatgtcgcgaatatggaaacctgc
gatattttgccggcccatgtatcggcgatgttgatgccattgcgtgaattgattgcttcc
ctgacgattatcgaagcattgccgcaaatcgaattagcgattggtgaaggtgtgactgcg
atggtactgcgtatcatgcagccactcggaccaggtgatgccgaaaaattgaaagccttt
gcagatcaatttcaagtgcaatggtggctgcagacggccggtcctgatagtgctgagccg
tattatccagcgcaatctgacttgcattatttgttgccagagttcggtgtgaagatgcct
ttcaaaccgactgattttacgcaggtgaatcatcacatcaatcgcgtattggttgctcgt
gctcttggtttgctcgatgtgcaaaaaggcgagcgtattcttgatttgttctgtggctta
gggaattttactttgccgattgcgactttggcgcgtgaagttgtgggtatcgaaggtagc
acggcattaactgagcgtgcgatggaaaacgcgaaggcgaatggtctcgatcataaacta
tcgttcgcaacacgcaatttatttgaggcgaaagccgaggacttcgttgcgcttggaaag
tttgaccgcttcctagttgatccaccgcgcgatggcgccatggcggtctgccaagctttg
atcgatttaggaaaattagcaccagaactgcgtcctaagcgcattgtgtacgtatcctgc
agtcctggtactttggcacgcgatgcaggcatgttagtgaatgaagctggctatgtaatg
cgtaaagcaggtgtcgtaaatatgttcccacatacctcacatgtggaatcaatggcagtt
tttgatttaccttga
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