Undibacterium cyanobacteriorum: RF679_10915
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Entry
RF679_10915 CDS
T10254
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ucy Undibacterium cyanobacteriorum
Brite
Enzymes [BR:
ucy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
RF679_10915 (hrpA)
Messenger RNA biogenesis [BR:
ucy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
RF679_10915 (hrpA)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
WMW79160
LinkDB
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Position
complement(2585737..2589954)
Genome browser
AA seq
1405 aa
AA seq
DB search
MSSHKTTKNSPEKVASDLRQLRDQLRQTAQEVNKQQPFRKKESIARPMNESEVAEKRAEN
ASTRGRRPPAPARTANSAKAVNSANRTPRRDQNGKPAVAARTGPHERADKARPHNVATDL
ATESLRNPLPPLTFPEELPVSGKRHEIAQALLQHQVIIVCGETGSGKTTQLPKICLELGR
GQKGLIGHTQPRRIAASSTAKRIAQELNSPLGEHVGFKVRFTDTLSKGASVKLMTDGILL
AETQNDPLLRQYDTIIIDEAHERSLNIDFLLGYLKQILSKRRDLKVIITSATIDAERFSK
HFAQGNKPAPIIEVSGRLYPVEIRYRPIQETEKDKDRDLMVAITDAVDELARCGSGDVLV
FLPGEREIRDAAEALRKHHPPHVEILPLFARLSVQEQERVLKTSNARRIVLATNVAETSL
TVPGIRYVVDAGLARVKRYSYRNKVEQLQVEAIAQSAANQRAGRCGRVAAGVCIRLYDEQ
EFKQRPAFTEPEILRSSLAAVILRMKSLRLTDVETFPFIEPPLGRAIADGYQLLQELGAM
DDNNQLTAVGRELARLPLDPRVGRMILAARDNQALDEVLIIAAALSVQDPRDRPMDAQNA
ADLAHKKFADEKSEFTSFLKIWKWFEEAIAHKKSNRQLQENCRENFLSQLRLREWREVHS
QLLTIVKEQGWRVNELPATYEQLHLSLLTGLLGNIGYKSDEEAHYLGARGIKFFVWPGSY
LAKKAGRWIMAAELVDTTRLYGRCLAQIQSEWLEKVGGHLLKKSYGEPRWEKRTGQVSGF
ERATLYGLVVYSQRRIQYGLIHPEEARQIFIREALVEGDFDTKAPFLAFNQKLVREIENI
EHKSRRQDVLVDDHLIAAFYDKLLPAGIYNAVLFEQWYKEASKTQTKLLYLNKDELMRHE
AAGVTTDVFPKTMQVAGVPLQLSYHFEPGSPRDGVTLWVPLYSLNQVSNDRCEWLVPGMV
KEKVQLLLKSLPQKIRRHCVPLPDYAAGFCDRNEFGKGNFLETLIADIREQKSLQCLTTD
FKFEMLPPHLSMNFKVLDEHGRQLDMGRNLASLRAEYGTQARQSFQKLASAEKLALLDTS
AGAHSDSSSRNTAAQVSAAPIPTSPGKAKANVTATGGTTSVMQQETLTTWSFGELPELLE
VQQGKQSLIGFPALFDKQSHCVIEVFDDPDEALRVHHVGLRRLFALQMKDQIKYLEKNIP
NLQQMGMQFMSLGTQEELREQIITSALDRAFMQAPLPKNSGEFNQRREEGKARLNLLANE
IARLASVILTEYYGLPKKLQGLKAHPQAMNDMQQQLQQLLTKRFVVDNDYTQLAHFPRYL
KAMAVRMDKLRADPSRDTKLMAEWSSVAQAWQRTPKRTGADADPKLTEFRWLLEELRVSL
FAQELRTPMPVSVKRLQKVWESMQR
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atgtcatctcacaaaacaacaaaaaattctcctgaaaaagtcgcctccgatctacgccag
ctgcgtgatcagctgcgccaaacggcgcaagaggtcaataaacagcagccgtttcgcaag
aaagaatcgatcgcgagaccaatgaacgagtccgaagtcgcggaaaagcgtgcagaaaat
gcaagcacacgcggccgtcgtccgcccgcaccggccagaaccgcaaattctgcgaaagct
gtaaattcagccaatcgaactccgcgtcgcgatcaaaacgggaagccggccgttgccgct
cgaacaggtcctcatgagagggcggacaaggctcgcccacacaatgttgcgacggacctg
gctaccgagagtttgcgcaatcctctcccgccattgaccttccctgaagagttacccgtt
tcaggcaagcgccatgaaatcgcgcaagctttattgcagcatcaagtgatcatcgtttgt
ggtgagaccggttcgggaaaaaccacgcagttgccgaagatttgtttggaacttgggcgt
gggcaaaagggcttgattggtcacacccaaccacgtcgtatcgccgcatcatcaaccgcc
aagcgtatcgcgcaagaattgaattcgcctttgggtgaacatgtcggttttaaagtgcgt
ttcaccgataccctcagtaagggcgcctcagtcaagttgatgaccgatgggatcttgtta
gcggaaacgcagaatgatccgctgctgcggcaatacgatacgatcatcatcgatgaagcc
catgagcgcagcctgaatattgatttccttttgggatatctgaaacagattttgtccaag
cgtcgcgatttgaaagtcatcatcacctctgcgacgattgatgctgaacgtttctccaaa
catttcgcgcaagggaataaacctgctcctatcatcgaagtatcggggcgcttatatcct
gtcgagatccgctaccgcccgattcaagagaccgagaaagataaagatcgcgatttaatg
gtggcgattacggatgcggtcgatgagttagcacgatgcggctcaggtgacgtgttggtc
ttcctgccaggtgagcgagaaattcgcgatgctgccgaagcgctgcgcaaacatcatcca
ccacatgtggaaatcttgcctttgtttgcgcgtctgtccgtgcaagaacaagaacgcgtt
ttaaagacctcgaatgcgcgtcgtattgtattggccaccaatgtagcggaaacatcgttg
accgtgcctggcattcgctacgtggttgatgcgggattggcacgcgtgaaacgctatagt
taccgcaacaaagtggaacagttacaggtcgaagcgattgctcaatcggccgcgaatcaa
cgcgccggtcgatgcgggcgtgtggcagcaggtgtctgtattcgtctgtacgacgagcaa
gagtttaagcagcgtccggcttttacggaacctgaaattttgcgttcatccttggcggcg
gtgatcttgcgcatgaagtcattgcgtttgaccgatgtcgaaacctttcccttcatcgag
ccacctctaggtcgcgccatcgccgatggttaccagctgctgcaagagctgggggcaatg
gacgacaataatcagctgactgcggttggacgcgagcttgctcgcttgccattagatccg
cgtgttggtcgcatgattttggctgcgcgtgataatcaggcgctggatgaagtcttgatt
attgctgccgcattgtcggtccaagatccgcgtgatcgcccgatggatgcgcaaaatgcg
gctgacttggcacacaaaaaatttgctgatgagaagtcggagttcacttcctttctgaag
atctggaaatggttcgaagaggcgatcgcgcacaaaaagagtaatcggcaattgcaagaa
aattgtcgcgaaaattttttgagtcaactacgtctgcgcgaatggcgcgaagtgcattca
cagctgctcacgatagtgaaagagcagggttggcgtgtgaatgaactccccgccacctat
gagcaattgcatctctctttgttgacaggcctattaggtaatatcggttataagtccgat
gaagaagcccattatcttggtgcccgtggcatcaagttttttgtgtggccgggttcatac
ttagcgaagaaagcaggacgttggatcatggccgcggagttggtagatacgacacgcttg
tatggtcgctgtttagcgcaaattcaatcggaatggttggagaaagtcggcggccatttg
ttgaaaaaatcctacggcgagccgcgctgggagaaacgcactgggcaggtttctggcttt
gaacgcgccactttgtatggtctggtggtgtatagccaaagacggattcaatacggcttg
attcaccctgaagaggcgcgtcagatttttattcgtgaagcacttgttgaaggtgacttt
gataccaaagcaccgttcctagccttcaatcaaaagttggtgcgcgagattgaaaacatc
gaacataaatcccgccgtcaagacgtgttggtcgatgatcacttaatcgctgctttttac
gataagttactacctgccggcatttacaatgcagtgctattcgagcagtggtataaggaa
gccagtaagacacaaacgaagctgctatatctcaacaaagatgagttgatgcggcatgaa
gcggcgggtgtaacgacggatgtgttcccgaaaaccatgcaagttgccggcgtgccgctg
cagctgtcctatcatttcgagccgggaagtccgcgtgatggtgtaacgctgtgggtacct
ttgtactcgctcaatcaagtgtcgaatgatcgctgcgaatggttagtgccaggcatggtg
aaggaaaaagttcaactgttgttgaaatccctgccgcagaaaatacgtcgccattgcgtg
cctttgccggactatgcggcaggcttttgtgatcgcaatgaattcggtaaagggaatttc
ctagagaccttgatcgccgatattcgtgagcaaaaaagcttgcaatgtttgaccactgac
ttcaagtttgaaatgctgccaccgcatttgagtatgaacttcaaggtcttggatgagcac
ggtcgccagcttgatatgggacgtaatctcgcaagtctgcgcgctgaatacggcacgcaa
gcacggcaaagttttcagaagctggcaagcgccgagaaacttgctttactcgacacgtcg
gctggcgctcattccgactccagttcacgcaataccgcggcacaagtctctgcagcacca
ataccaactagcccggggaaagcgaaggctaatgtcaccgcaacaggtggcacaacgtcg
gtcatgcagcaagagacactgaccacatggtcgtttggcgaattaccagaattgcttgaa
gtgcagcagggcaaacaaagtttgattggtttcccagccttgttcgataagcaaagccat
tgcgtcatcgaagtatttgatgatcctgatgaagcattgcgcgtgcatcatgttggtttg
cgacgtttgttcgccttacagatgaaagatcaaatcaaatatctggaaaaaaacatcccc
aatttgcagcaaatgggaatgcaatttatgtcgttgggtacgcaagaagagttgcgcgag
cagattattacgagtgcgctcgatcgcgccttcatgcaagcaccattgccgaaaaattcg
ggtgaatttaatcaacggcgcgaagaaggcaaagcgcgtttgaatctcttagccaatgag
atcgcgcgactcgcctcggtgattttgactgagtactacggcttaccgaaaaagctgcaa
ggcttaaaggctcatccgcaagcaatgaacgatatgcagcaacagttgcagcagctattg
accaagcgctttgtggtcgacaatgattacacgcagttggcgcatttcccgcgttatttg
aaagcgatggctgtgcgcatggataagctgcgcgcagatccaagtcgcgatacgaagttg
atggcggagtggagtagcgtggcacaagcgtggcagcgtactccaaaacgaacgggagca
gatgcggatccgaagctaacggaattccgttggttgctggaagagttgcgcgtctcgctt
tttgcgcaagagttgcggacgccgatgccggtgtctgtgaagcgtttgcagaaggtgtgg
gagagtatgcagcgttag
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