Undibacterium cyanobacteriorum: RF679_14300
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Entry
RF679_14300 CDS
T10254
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ucy Undibacterium cyanobacteriorum
Pathway
ucy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ucy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RF679_14300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ucy03019
]
RF679_14300
Enzymes [BR:
ucy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RF679_14300
Messenger RNA biogenesis [BR:
ucy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RF679_14300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
P-loop_SecA
MerR-DNA-bind
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WMW79810
UniProt:
A0ABY9RHQ3
LinkDB
All DBs
Position
complement(3417570..3419060)
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AA seq
496 aa
AA seq
DB search
MTDTVIPPSTTPVSADAPARFDSFGLAPEILRALQEQGYEHPTPIQEQAIPVVLQGRDVM
GAAQTGTGKTAGFSLPIIQNLLVHANTSASPARHPVRALILTPTRELADQVADNVKAYSR
FTGLRSAVVFGGVDIGPQTAILRGGVEIVIATPGRLLDHVAQKSINLSQTQILIMDEADR
MLDMGFLPDLQRIINLLPKKRQNLMFSATFSPEIKKLAASFLSDPVTIEVARSNATSENV
TQVLYKVAEEEKRDAVSFIIRERGLKQVIVFSNTKMGASRLAVHLVKQGVKAAAIHGDKS
QQERMAALEAFKQGEVEILVATDVAARGLDISEMPCVINFDLPYNAEDYVHRIGRTGRAG
SKGDAISLHTDKDDRLLADIEKLTKQKIVRLQLAGFVATSVHTERRENSGRGEREARGSD
RHDRGERGDRAERSERSARTYQAPREKVDPWFLKPYEPSTASAVAAKPEVATKVDASKTP
KRAALLGGGSLLGKKN
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgaccgataccgtaattcctccaagtactacccctgtttcagctgatgctcctgcccgt
tttgattcattcggtttagcacctgaaattctgcgcgcgttgcaagagcaaggctatgaa
cacccaacgccaattcaggagcaggcgatcccagtggtattgcaagggcgtgatgtgatg
ggcgcggcacagacggggactggtaaaacggcgggattctcgttaccgattattcagaac
ttgttggttcacgctaatacgagcgcatcaccagcacgtcatccagtgcgtgcattgatt
ttgacaccaacccgtgaattggcggatcaagttgccgacaacgtcaaagcgtattcgcgc
ttcaccggtttgcgttccgcagtggtatttggtggcgttgatatcggcccgcagacagct
attttacgtggtggtgtcgagatcgtgatcgccacgccaggccgcttgctggatcacgtg
gcacagaagtccatcaatctgtcgcagacacaaattttgatcatggatgaagccgatcgc
atgttggatatgggcttcctgccagacttgcaacgcatcattaatctgttgccgaagaag
cgccaaaatttgatgttctcggccactttctcgccagaaattaaaaaattagctgccagt
tttttgagtgatcccgtcaccattgaagtggcacgtagcaatgcgacttctgagaacgtg
acgcaggtcctatacaaagtggcagaggaagaaaaacgtgacgccgtttctttcatcatt
cgcgaacgtggcttgaaacaagtcatcgtcttctccaataccaagatgggcgcttcacgc
ctcgcagtgcatttggtcaagcaaggtgtgaaggcagccgcgattcatggtgacaaatcg
caacaagaacggatggcggcactcgaagcattcaaacaaggtgaagtagaaatcttggtg
gctaccgacgtcgccgcgcgtggtcttgatatttctgaaatgccgtgcgtgattaacttt
gatttgccgtataacgctgaagattatgtgcatcggattggtcgtactggtcgtgccggt
tctaagggcgatgcaatctcgctgcatactgataaagatgatcgattattggccgacatc
gagaagctcaccaaacaaaaaatcgtacgtttgcaattggcaggttttgtcgcaacgtcg
gtacataccgagcgtcgtgagaattctggccgtggtgagcgcgaagctcgtggatccgat
cgccatgatcgtggtgaacgcggtgatcgtgctgagcgtagtgaacgtagtgctcgcact
taccaagcgccgcgtgaaaaagtcgatccatggttcttgaagccgtatgagccaagcacg
gcgagtgcggttgctgcgaagccggaagtcgccacgaaagtggatgcgagcaagacgccg
aagcgcgccgctctacttggtggcggtagcttgttgggtaaaaagaactaa
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