Undibacterium cyanobacteriorum: RF679_16805
Help
Entry
RF679_16805 CDS
T10254
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ucy Undibacterium cyanobacteriorum
Brite
KEGG Orthology (KO) [BR:
ucy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ucy03016
]
RF679_16805
Enzymes [BR:
ucy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
RF679_16805
Transfer RNA biogenesis [BR:
ucy03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
RF679_16805
Prokaryotic type
tRNA splicing ligases
RF679_16805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
WMW80287
UniProt:
A0ABY9RGC7
LinkDB
All DBs
Position
4014808..4016037
Genome browser
AA seq
409 aa
AA seq
DB search
MKTQNYQLLEIENAAPIKMWTEGVPVEDDAKEQLTNTAKMPFIFKHLAVMPDVHLGKGST
IGSVIPTHKAIIPAAVGVDIGCGMIACKTTLNAKDLPDNLGPLRAAIEKAVPHGRTPNRG
GRDKGAWGDRPPSLVDEAWKSLEPGFKAITEDYPKLKNTNQHKHLGTLGTGNHFIEICLD
EKDTVWIMLHSGSRGVGNAIGTLFIELAKKDMQQHLCNIPDQDLAYFEEGSKYFGDYVRA
VGWGQQFAKTNREIMMQHVIDAMRNIITKPFETHLEAVNCHHNYVQKETHFGEEVYVTRK
GAVSAKKGELGIIPGSMGARSYIVRGLGNEESFQSCSHGAGRTMSRTKAKKLFTIEDQRR
ATEGVECRKDADVIDEIPMAYKDIDAVMDAQKDLVEVVYTLKQVVCVKG
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacacaaaattatcaattattagaaatcgagaatgccgcaccgatcaaaatgtgg
actgaaggtgtgcctgttgaagacgacgccaaagaacaattgacgaacacggccaaaatg
ccattcatttttaaacatttggcggtgatgcctgacgtgcatttaggaaaaggctcaact
atcggtagcgtgatccctacccataaagccattattcccgccgcagttggcgtggatatt
ggttgcggaatgatcgcttgcaaaaccaccttgaacgcaaaagacttacccgataactta
ggtccattgcgtgcagccatcgagaaagcggtaccgcatggtcgtacgccaaatcgcggt
gggcgtgataaaggcgcttggggcgatcgtccaccaagcttagtcgacgaagcgtggaaa
agcttggaacctggtttcaaagcgatcactgaagattatccaaaactcaaaaataccaat
cagcataagcatttgggaaccttggggactggtaatcactttatcgaaatttgcttggac
gaaaaggatacggtgtggatcatgctgcactccggttcacgcggtgttgggaatgcgatt
gggacgctattcattgaattagcgaagaaagatatgcagcaacatttatgcaatattccc
gatcaagatctcgcctatttcgaagaaggtagcaagtattttggtgactacgtgcgtgcc
gttggttggggacagcaatttgcaaaaaccaatcgcgaaatcatgatgcaacatgtgatc
gacgcgatgcgaaacatcatcaccaaaccattcgagacgcatttagaagcggtgaattgt
caccacaactatgtgcagaaagaaacgcactttggtgaggaagtgtatgtaacgcgaaaa
ggtgcggtgtcggcgaaaaaaggtgaattgggaattatcccaggatcgatgggtgcgcgt
agctacatcgttcgtggtttaggaaacgaggaaagcttccaatcctgcagccacggcgca
ggacgaaccatgagccgtactaaagcgaaaaagttgttcaccatcgaagatcaaagacgt
gcgaccgaaggcgttgaatgccgtaaagatgccgatgtgatcgatgagattcctatggca
tacaaagacatcgacgccgtgatggatgcgcagaaagatttggtggaagtggtgtacacc
ttgaagcaggtggtgtgtgtcaagggatag
DBGET
integrated database retrieval system
