Candidatus Uzinura diaspidicola: ASNER_026
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Entry
ASNER_026 CDS
T02439
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
udi
Candidatus Uzinura diaspidicola
Pathway
udi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
udi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ASNER_026 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
udi03021
]
ASNER_026 (rpoC)
03400 DNA repair and recombination proteins [BR:
udi03400
]
ASNER_026 (rpoC)
Enzymes [BR:
udi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ASNER_026 (rpoC)
Transcription machinery [BR:
udi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ASNER_026 (rpoC)
DNA repair and recombination proteins [BR:
udi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ASNER_026 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
AGC66813
UniProt:
L7VMM4
LinkDB
All DBs
Position
22129..26418
Genome browser
AA seq
1429 aa
AA seq
DB search
MSLKRKKPSSNFNKITIGLASPEAILQESYGEVLKPETINYRTHKPERDGLFCERIFGPI
KDYECACGKYKRIRYKGIICDRCGVEITDKNVRRDRIGHIRLVIPVVHIWYFKALPNKIG
YLLDFSSKKLDMIIYYERYLVIQVGAASRPDQTPIEKLELLTENEYLSIIERLPLNNQEL
DDKDPNKFIAMMGAKCIEELLKRLNLDDLADELRNQSFNETSKLIRMETLKRLQVVEAFK
YSANKLQNRREWMVVHILPIIPPELRPLVPLAGGRFATSDLNDLYRKIIIRNNRLKRLLQ
IDAPEVIIRNEKRMLQEAVDSLYDNTKKSYSIKSEGNRPLKSLSDFLKGKQGRFRQNLLG
KRVDYSARSVIVVGPKLKLHECGIPKDMAAELYKPFIIRKLIERGLVKTVKSAKKMIDTR
KQAVWEILENILKGHPLLLNRAPTLHKLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDGD
QMAVHLPLGPLAILEAQLLMFSSQNILNPANGSPITVPSQDMVLGLYYMTKELKSTPYHK
VKGEGIVFYSPEEVQIAYNANIVSINACIKVKVPIMEQEHLLHKIVETTVGRVLFNKFVP
IYKVGYINELLTKKSLRDIIGRILTLTNIPVTVKFLDDIKELGFYNAFKGGFSFSLKDII
IPNNKRAMIKNAIQQIDSVIGNYNMGLITNQERYNQVIDIWTSTNAMLTEKVMSKMQEDK
RGFNSVYMMLDSGARGSKEQIRQLSGMRGLMAKPQRTGGGSGEIIENPIISNFREGLSIL
EYFISTHGARKGLADTALKTADAGYLTRRLVDVAQDVIIREENCLTIRGLEIGALKKNEE
IVESLYDRILGRIALYDIYHPNDDEVIVSADEMIDEECASLISKLGIEIIYVRSPLTCES
KSGICAKCYGRNLSTGKLVQKGEAVGVIAAQSIGEPGTQLTLRTFHVGGTAGNIVEATSQ
IFARDDGIIELEDLRSIYTEDEMGKVIELVVSRYTEMKLINRDGSVLMKHHIPYGASLFV
KQGNYVNKGAEICRWDPYNAVIISERSGIISYEAIEKGVTFQIEDEQAGIQEKVILESRD
KNIVPSLKIISDDEDKREIKIYNMPVGAHLVVDNGDRIKVGKVIAKIPRKYGKMTDITGG
LPRVTELCEARNPSNLGIVSDIDGVVSFGNMKRGNREIFIENKTGEIKKYLVRVSSQIVV
QENDYVKAGTPLSEGTIAPDDILNIKGPKAVQEYIVNEIQEVYRLQGVKINNKHFEIIVR
QMMLKVKIVDAGDSCFLEDSIEHKTDFIEENNRIFGMKVVEDPGDSEKFKYGQLLNMVEY
RNENDLLESLGKKNIITREVIPATAKPILQGITRAALHTKSFVSAASFQETTKVLNEAAI
SGKTDDLLGLKENVIVGHKIPAGTGLREYQDFIVFSKLRFDEIPLYGIS
NT seq
4290 nt
NT seq
+upstream
nt +downstream
nt
atgtcattaaaaagaaagaaaccaagtagtaatttcaataaaattactattggcctagcc
tcacctgaggctattcttcaggaatcttatggggaagttcttaaacctgaaacaataaat
taccgcactcacaaaccggagcgcgacggattattttgtgaacgtatatttggtcctatc
aaagattacgaatgtgcttgtggcaaatataaacgtattcgttataaaggtattatatgt
gatcgttgtggagtagagataactgataaaaatgttcgtagagatagaataggacacatt
agattagtaatacctgtggttcatatttggtattttaaggcgttgcctaataaaattggt
tatctcttagatttttcttctaagaagcttgatatgattatatattatgaacgctatctt
gttatacaggttggtgctgcttctcgacccgatcaaacgcctatcgagaaactagaatta
ttaactgaaaatgaatacctttctattatagaaaggcttcctcttaataatcaagaactt
gatgataaggatcctaataaatttattgctatgatgggcgctaagtgtattgaagaactg
cttaaacgtcttaatcttgatgatctagctgatgaattgcgaaaccaatcttttaatgaa
acatccaagcttattaggatggaaacattgaaacgattgcaagtagtagaggctttcaag
tattcagctaataagttacaaaacagaagagaatggatggtcgttcatatacttcctata
attcctccagaactacgtcctttagttcctcttgctggtggtcgttttgcaacttcggat
ctaaatgatttatatcgtaaaattattattcgtaataataggcttaaacgcctattgcaa
atagacgcgccggaagttatcataagaaatgaaaaacgtatgctgcaagaagcagttgat
tcactgtatgataatactaaaaaatcatattctataaaatccgaaggaaacagaccgtta
aaatctctttctgattttttaaaaggaaaacaaggtagatttcgtcagaatctattaggt
aagcgtgtagattattctgctaggtcagtaattgtagttggacctaagttaaaattgcat
gaatgtggaataccaaaagatatggcagcagaactttacaaaccttttattattcgtaag
cttatagagcgtggtcttgttaaaacagtaaaatctgctaaaaaaatgatagatactaga
aaacaggcagtttgggaaatattagaaaatatccttaaaggacatcctttgttacttaac
cgtgctcctactttacataaattaggaattcaagcctttcaaccaaaacttatagaagga
aaagcaatacaattgcatccattagtttgcactgcatttaatgcagattttgatggtgat
cagatggcagtacatctgccattagggcctttagcaatactagaagcccagcttctcatg
ttttcttctcaaaatattttaaatccagcaaatggatctcctattactgttccgtcccag
gacatggtattagggctttattatatgactaaggaacttaaatctactccatatcataaa
gtaaagggagaaggtatcgtattttattcccctgaagaagtacagattgcctataacgca
aatatagtatcaattaatgcatgtatcaaagttaaagttcctattatggagcaggaacac
ctcttacataaaattgtagaaactactgtaggtagagtgttatttaataaatttgtacct
atatataaggtaggttatatcaatgagttacttactaaaaaatctttgcgtgatattatt
ggacgaattttgacgttaacaaatattccagtgactgtaaaatttcttgatgatattaag
gagctaggcttctataatgcttttaaaggaggattttcgttcagtttaaaagacatcata
attccaaataataaacgggcgatgattaagaatgcaattcaacagatagattcagtaatt
ggaaattataatatggggctcatcactaatcaggaacgatacaatcaagttattgatata
tggaccagcactaatgcaatgcttacagaaaaggtaatgagtaaaatgcaagaagataag
agaggatttaattctgtttatatgatgttagattcaggagctagaggatcaaaagaacaa
atacgtcaactttcaggtatgcgagggttaatggctaaacctcaaagaactggtggaggt
agtggagagattattgagaatcctattatttctaattttcgagaaggactttctattttg
gagtattttatatctactcacggtgctcgtaaaggattggcagatactgcgttgaaaact
gcagatgcaggatatttaactcgtcgtttagtagatgttgctcaagacgtcattataaga
gaagaaaattgtttaacaataagaggacttgaaataggagctcttaaaaagaacgaagag
atagtagaatctttgtatgatcgtattttaggacgtattgcactttatgatatatatcat
cctaatgatgatgaagtgattgtttctgctgatgaaatgattgatgaagaatgtgcttct
cttatttcaaaacttggtatcgaaataatatatgtacgatctccccttacttgcgagtca
aaaagtggtatttgcgctaaatgttatggtagaaatctttctaccggaaaacttgtacaa
aaaggagaagccgtaggcgtgatagcggctcaatctataggagaacctgggacacaactt
acacttcgaacttttcatgtgggaggtactgcaggaaatatagtagaggctacttctcaa
atatttgctagagatgatggtataatagagttagaagatctaaggtctatatatactgaa
gatgaaatggggaaagttattgagttggtagtctctagatatacagagatgaaactgata
aatcgagatggctctgtgttaatgaagcaccacataccttacggtgcttccttattcgtt
aaacaaggaaattatgttaataaaggagctgaaatatgtcgttgggatccttataatgct
gttattatatcagagcgctctggtataatatcttatgaagctattgaaaaaggagttact
tttcaaatagaggatgaacaagcaggaattcaagaaaaagtaatattagaatcacgagac
aagaacattgttccttctttaaagattattagtgatgatgaggataaaagagagatcaag
atatataatatgccggttggcgcacatttagtggttgataatggagatagaataaaagta
ggtaaggtaatagctaaaattccgagaaaatatggtaaaatgacagatatcactggagga
ctaccacgtgtaacagaattatgtgaagcacgtaacccttctaatctaggtattgtatct
gatattgatggagtcgtaagttttggaaacatgaaaagaggaaatagagaaattttcata
gaaaataaaactggtgaaattaagaagtatcttgttagagtttctagtcagattgtcgtt
caggaaaatgactatgtaaaagcaggaacacctctttcagaaggcactatagcaccagat
gatatcttaaatattaaagggccgaaggccgttcaggaatatattgtaaacgaaattcag
gaagtttatcgtttgcagggagtaaagattaataataagcattttgagattatagtacgt
caaatgatgcttaaagttaagatcgtagatgcgggggattcatgttttcttgaagatagt
atagaacataaaacagactttatagaagaaaataataggatatttggaatgaaagttgta
gaagatcctggagattcagaaaaattcaaatatggtcaacttcttaatatggtagaatat
cgtaatgaaaatgatctactagaaagtctaggtaaaaagaatataataactcgtgaagtt
attccagctacagccaaaccaattcttcaaggtattacacgagctgccttacatactaaa
tcttttgtttctgctgcttctttccaggaaactacaaaggtattaaatgaggctgctatc
agcggaaagactgatgatttgcttgggttgaaggaaaatgttattgtaggtcataagatt
cctgctggaactggtcttagagaataccaagatttcatcgttttttcgaaactaagattt
gatgagattccattatatggaatatcataa
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