Uloborus diversus: 129217394
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Entry
129217394 CDS
T09235
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
udv
Uloborus diversus
Brite
KEGG Orthology (KO) [BR:
udv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
udv03016
]
129217394
Enzymes [BR:
udv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
129217394
Transfer RNA biogenesis [BR:
udv03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
129217394
Prokaryotic type
tRNA splicing ligases
129217394
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
129217394
NCBI-ProteinID:
XP_054707666
LinkDB
All DBs
Position
2:complement(145479002..145519455)
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AA seq
506 aa
AA seq
DB search
MGVRSYNEELPYLEKINNVCWRIKKGFVSNMKVEGIFYVNSKLEKLMFDELRNACRPGNI
GGFLPAMKQIGNVAALPGIVSKSIGLPDVHSGYGFAIGNTAAFDMDDPKAIVSPGGVGFD
INCGVRLLRTNLMEKDVQPIKEQLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWS
LREGYAWAEDKEHCEEYGRMLNADPAKVSMKAKKRGLPQLGTLGAGNHYAEIQVVDEIYD
KNSASKMGIDSKGQVCVMIHSGSRGFGHQVATDALVAMEKAMKRDQIEVNDRQLACAHIK
SQEGQDYLKSMAAAANFAWVNRSSMTFLSRQAFAKAYNTTPDDLDMHVIYDVSHNIAKVE
KHYLDGKEKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEEGM
RGTFGTTCHGAGRALSRAKSRRNLDYMDVLNNLAEMGISIRVASPKLVMEEAPDSYKDVT
DVVNTCHDAGISKKCIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgggagttcgttcatacaatgaagagcttccatacttggaaaagatcaacaatgtttgc
tggaggattaaaaaaggctttgtgtcaaatatgaaggtggaaggaatattttatgtgaat
agtaaattagagaaactgatgtttgatgaacttagaaatgcatgtcgccctggtaatatt
ggaggatttttgccagcaatgaagcaaataggaaacgtcgctgctctccctggtattgtg
tccaaatcaattggtctacctgatgttcattcaggatatggctttgctattggtaatacc
gctgcatttgatatggatgatccaaaagctattgtgtcaccaggtggtgtaggttttgat
attaactgtggtgttcgtctgttaaggacaaacctgatggaaaaagatgttcagcctatc
aaggaacaacttgcacaaagtatgtttgatcacattcctgttggagttggttcaaaaggc
atcatcccaatgaatgccagagatcttgaagaagctttagaaatgggaatggattggtcc
ttaagagagggttatgcatgggctgaagataaagaacattgtgaagaatatggtagaatg
ttaaatgctgatccagctaaagtttccatgaaagctaaaaaaagaggtttgcctcagctg
ggtacacttggagcaggaaatcactatgcagaaattcaagttgttgatgaaatttatgac
aaaaatagtgctagtaagatgggtattgattcaaaaggtcaagtttgtgtcatgattcat
agtggaagtcgtggttttgggcatcaagtagcaacagatgctttggttgcaatggaaaag
gctatgaagcgtgaccaaattgaagtcaatgatagacagttagcttgtgctcacataaaa
tctcaagaaggtcaagactacttgaaatcaatggctgctgctgcaaattttgcttgggtg
aacagatctagcatgacttttctcagtcgacaggcttttgctaaagcatacaacacaaca
ccagatgatttagatatgcatgtaatctatgatgtgtcccataatattgctaaagtggaa
aagcattacctcgatggcaaagaaaaaacgttactagtgcaccgtaaagggtcaaccaga
gcgtttccaccccatcatcctcttatcccagttgattatcagttaactggccagcctgtt
cttattggaggtactatgggaacttgtagctatgtgttaactggtacagaagaaggcatg
cgaggaacatttggtactacttgtcatggtgcaggtcgtgctttatctagagcgaaatct
cgccgaaatttagattacatggatgtcctaaataatcttgcagaaatgggaatttcaatc
agagtggcttcacccaaattagtcatggaagaagctcctgactcttataaagatgttaca
gatgttgtcaatacatgtcatgatgctggcatcagcaaaaaatgtattaaattacgacct
attgcagtcattaaaggataa
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