Uloborus diversus: 129221861
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Entry
129221861 CDS
T09235
Name
(RefSeq) spliceosome RNA helicase DDX39B-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
udv
Uloborus diversus
Pathway
udv03013
Nucleocytoplasmic transport
udv03015
mRNA surveillance pathway
udv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
udv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129221861
09122 Translation
03013 Nucleocytoplasmic transport
129221861
03015 mRNA surveillance pathway
129221861
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
udv03019
]
129221861
03041 Spliceosome [BR:
udv03041
]
129221861
Enzymes [BR:
udv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129221861
Messenger RNA biogenesis [BR:
udv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
129221861
Spliceosome [BR:
udv03041
]
Complex C
Other components
EJC/TREX
129221861
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
129221861
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
129221861
NCBI-ProteinID:
XP_054712188
LinkDB
All DBs
Position
5:131231131..131272592
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AA seq
423 aa
AA seq
DB search
MTENEAELLDYEDEEEQEQTAPEAAIETKKPAGGYVSIHSSGFRDFLLKPELLRAIVDCG
FEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQLDPVDNQVSVLVMCHTRE
LAFQISKEYERFSKYMPTIKVSVFFGGMTITNDEKILKSNCPHIVVGTPGRILALVKSKK
LNLRHIKHFVLDECDKMLEALDMRRDVQEIFRSTPHEKQVMMFSATLSKEIRPVCKKFMQ
DPMEVYVDDEAKLTLHGLQQYYVKLKDNEKNRKLFELLDLLEFNQVVIFVRTVPRCMALA
QLLVEQNFPAIAIHRAMTQEDRLSRYQQFKDFHKRILVATNLFGRGMDIERVNIVFNYDM
PEDSDTYLHRVARAGRFGTKGLAITFVSDEGDAKTLNEVQERFDVNISELPEEIDISSYI
EGR
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgactgaaaatgaagctgaacttttggattatgaagatgaagaagaacaagaacaaact
gctccagaagcagccattgaaaccaaaaagcctgcaggtggctatgtatcaattcatagt
tccggtttcagagatttcttgttaaagccagaacttctaagagcaattgtagattgtggt
tttgaacatccatcagaagttcaacacgaatgtattccacaagcaatcttgggcatggat
atattatgtcaagccaaatcaggaatgggtaaaactgctgtttttgttttggctacatta
cagcagctggatcctgttgataaccaggtgtctgttcttgttatgtgtcacaccagagaa
ttggcattccagatttctaaagaatacgaaagattctctaaatatatgccaactataaaa
gtgagcgtatttttcgggggaatgaccataacaaatgatgaaaaaattctgaaatccaat
tgtccacacattgttgttggtactccaggacgtatattggcccttgtgaagtccaagaag
ttgaaccttcgtcacattaaacattttgtgttggatgaatgtgataaaatgctagaagct
ctagatatgcgtcgagatgttcaagaaatatttcgcagcactccacatgaaaagcaagtg
atgatgtttagcgctaccctaagtaaagaaattagacctgtctgcaaaaagtttatgcaa
gatcccatggaagtatatgttgatgatgaagctaaattaactcttcatggactgcagcag
tattatgtgaaacttaaggataatgaaaaaaatagaaagctttttgagcttcttgatctt
ctagaatttaaccaggttgtcatatttgttagaactgttccaagatgtatggcacttgct
caactattagttgaacaaaacttccctgctattgcaattcatagagcaatgacgcaagag
gacagattgtcaaggtatcaacagttcaaagatttccacaagcgcatattagttgctact
aatttatttggcagaggtatggatattgaaagagtcaacattgtatttaattatgatatg
ccagaagattcagatacatatctgcacagagttgctcgtgctggacgttttggaactaaa
ggtttggctatcacttttgtatcagatgaaggtgacgcaaaaactctaaatgaagttcaa
gaaagatttgatgttaatatatctgaactaccagaagaaattgacatctcttcatatatt
gaaggacgatga
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