Uloborus diversus: 129223738
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Entry
129223738 CDS
T09235
Name
(RefSeq) CCR4-NOT transcription complex subunit 4-like isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
udv
Uloborus diversus
Pathway
udv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
udv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129223738
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
udv03000
]
129223738
03019 Messenger RNA biogenesis [BR:
udv03019
]
129223738
04121 Ubiquitin system [BR:
udv04121
]
129223738
Enzymes [BR:
udv01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
129223738
Transcription factors [BR:
udv03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
129223738
Messenger RNA biogenesis [BR:
udv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129223738
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
129223738
Ubiquitin system [BR:
udv04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
129223738
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Nup35_RRM_2
zf-C3HC4_2
zf-UDP
Motif
Other DBs
NCBI-GeneID:
129223738
NCBI-ProteinID:
XP_054714069
LinkDB
All DBs
Position
6:82094987..82135801
Genome browser
AA seq
820 aa
AA seq
DB search
MSVNHDQNLECPLCMDPFEMDDINFYPCTCKYQICRFCWHRIRTDENGLCPACRKQYPED
PADFKPLSVEEWQKIKNEKRQKDQQKKQKLSESRKHLENVRVVQKNLVFVVGLPTRLADA
EVLKKYDYFGKFGKIHKVVVNQSTNYAGYQGPSASAYVTYCRPEDALRAIKSVNNIQVDG
RTLKASLGTTKYCSNFLKNQQCPKTDCMYLHELGDEAASFTKEDMQQGKHQEYEKKLQDQ
ILGCNNNNRKQTVSPPPQDDSTNSQKESWPCTVQNAKESRTSRSKDSSQNQRTDGKSNRS
KKHTSEGQKSKKSKNKSSDSGQHSNASKSTTKEESTVQRKSQKSKHNKESTSTQPIQRIE
TVPATSRGNGLSGKLTEVIEMNNKNAQTTFVHIAEQQSQPKPVSASIKIARSESPGLPPS
PISSSSSSLFTPFGSLSSNFMSSSSPSPPPSNNPLSFDNLGSSANTQEDSSPVNSYAAPS
VGIEQKRQSPNPLFGNLESNDSLFSHMNYLPASTDCGSYNGHLHNEESATTDSSDWSSNY
SFGESQKQMPEDDLDFDPWNESSKGLADLIAKEAVHTPACSGMPTPPGFFQPIKPPVPNQ
QRIAVPPPGFSSRQIPHTNSMNHIQGMFSPNTEFLSNKMSSFRESRQTLNNCTHYYQDAP
QNPIGISNQYKQQFPQPNTRDIIENIRLKKNCDERLRTLFPDMLYHLGQNRNLQKSQLQN
GPTWNSQSREHISWLSNEIPLLNSGNIMDAQRSSPQLWMKALQQLTLEENQTQLNGHSPY
ANPFLRGQWPTAQCPPPGFVAPSRSPANSPFQHMPVNQKI
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtcaatcatgatcaaaatcttgagtgtcctctctgcatggacccatttgaaatg
gatgacattaacttttacccatgcacatgtaaataccaaatctgccgtttctgttggcac
cgaataaggacagatgaaaatggtctttgtcctgcttgccgaaaacaatatcctgaagat
cctgcagacttcaaacctctttctgttgaagagtggcagaaaataaagaatgaaaaaaga
cagaaagaccaacagaaaaaacagaaattatctgaaagcagaaagcatttagaaaatgtt
agggttgtacagaaaaatttagtatttgttgttggtctgccaactcgattagcagatgct
gaagtcctaaaaaaatatgactattttgggaaattcggcaaaatacacaaagtagttgtg
aatcaaagtacaaattatgccggttatcagggcccaagtgcaagtgcttatgtaacatat
tgtagaccagaagatgcattaagagctattaaatctgtaaataatattcaagttgatggt
aggacattaaaagcatctctgggaacaacaaaatattgtagcaattttttgaaaaatcag
cagtgtcctaaaacagattgtatgtatttacatgaacttggtgatgaagctgctagtttt
actaaagaagatatgcagcagggaaaacatcaagaatatgagaaaaaactacaagatcaa
attctaggctgcaataataataacagaaaacaaactgtttctcctccaccacaagatgat
tctacaaattctcaaaaagagtcttggccatgtacagtgcaaaatgccaaggaatctcga
acaagtagatcaaaagattcttcacaaaaccagagaacagatggcaaaagcaatcgttct
aaaaaacatacctcagaaggacaaaaaagcaaaaaaagtaaaaacaaatcatctgattct
gggcagcatagtaatgcatccaagagcacaactaaagaagaaagtactgttcaaagaaag
agtcaaaaatcgaaacacaacaaagaatctacttcaacacaacctattcagaggatagaa
actgttcctgctaccagcaggggaaacggcttgagtggaaaactgactgaagtcatagaa
atgaataacaaaaatgcgcaaactacattcgttcatattgcagaacagcaatctcaaccc
aaaccggtgtctgcgagtattaaaatagcgcgtagtgaaagtcctggattgccaccttca
cctatatcttcttctagttcctcattattcacaccttttgggagcttatccagtaacttc
atgtcttcatcttcaccttctcctccgcccagcaacaaccctctttctttcgacaaccta
ggatcttctgcgaatactcaggaggacagttccccggtcaattcatatgcagctccatcc
gtggggatagaacagaaaagacagtcccctaatcctttgtttggtaatttagaaagcaat
gattctttgtttagtcacatgaattaccttcctgcttcaacagactgtggttcctataat
ggacatttgcacaatgaagaatctgccacaacggatagttctgattggagctccaattat
tcatttggggaatcccagaagcaaatgcctgaagatgatttggattttgatccttggaat
gaatcatctaaaggcttagctgatcttattgccaaagaagcagtccacactcctgcttgt
tctggtatgccaacaccccctggtttctttcaacctataaaacccccggtgccaaatcag
cagaggatagctgtcccacctcccggttttagttccagacaaattccgcacacaaattct
atgaatcacattcaagggatgtttagtcctaacacagaattcctatcaaacaaaatgtca
tcctttagggaatcaagacaaactttgaataactgcacacattattatcaagatgcacct
caaaatcctattggtatatccaatcagtataagcaacaatttcctcaacctaatacccgt
gatattattgaaaatattcgattaaagaaaaattgtgatgaacgtttacgtaccttgttt
cctgatatgttatatcacttaggtcaaaataggaatctacaaaaaagtcaactacagaat
gggccaacatggaattctcaaagtagagaacatatatcatggttgtctaatgaaattcct
ttattaaattcaggaaatattatggatgcacaaagaagtagtccacaactatggatgaaa
gctttgcagcaactaacacttgaagaaaaccaaactcagctcaacggtcattctccttat
gcaaatccttttttgcgaggccaatggccaacagcccagtgccctcctcctggttttgtt
gcaccctctaggtccccagccaactcccccttccagcacatgccagttaaccagaaaata
taa
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