Uloborus diversus: 129224105
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Entry
129224105 CDS
T09235
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
udv
Uloborus diversus
Pathway
udv03013
Nucleocytoplasmic transport
udv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
udv00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
129224105
03015 mRNA surveillance pathway
129224105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
udv03019
]
129224105
Enzymes [BR:
udv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
129224105
5.6.2.5 RNA 5'-3' helicase
129224105
Messenger RNA biogenesis [BR:
udv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
129224105
mRNA cycle factors
Common to processing body (P body) and stress granule
129224105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_19
AAA_30
ResIII
SLFN-g3_helicase
NPHP3_N
UvrD-helicase
DEAD
NAT10_TcmA_helicase
AAA_16
nSTAND3
SRP54
ATPase
AAA_22
AAA_32
Motif
Other DBs
NCBI-GeneID:
129224105
NCBI-ProteinID:
XP_054714486
LinkDB
All DBs
Position
6:complement(54494344..54862831)
Genome browser
AA seq
1118 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDPEEGNDLLGADTQGSDFEFTDFSLPSQTQASQIEQTQSQSSRS
QLNGPDLSLPNGLDRDVCSTTQSLGELTFQEEEEDQYYTKDLPEHACKYCGIHDPSCVVQ
CNICKRWFCNGRGNTSGSHIINHLVRAKHKEVTLHKDGPLGETVLECYSCGCRNVFVLGF
IPAKADSVVVLLCRQPCAAQSSLKDMNWDPDQWKPLISDRSFLAWLVKVPQEQEQLRARQ
VTAPQINKLEELWKDNVDASFEDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKMEADY
DKKLKESQTQDNIEVRWDIGLNKKIISYFTIAKSDTDMRLMHGDELRLRYLGELHKPWSG
VGHVIKIPDNYSEEVGIEMKTNLGVPTDCTSNFVVDFVWKSTSFDRMQAALRKFAVDETS
VSAYIYHKLLGHEVEDVLMRCQLPKHFSAPNLPELNRSQVYAVKHALQRPLSLIQGPPGT
GKTVTSATIVYHLVRQSNGPVLVCAPSNIAVDQLTEKIHRTGLKVVRLCAKSREAINSPV
SFLALHNQIRNLEGHSELHKLQQLKDETGELSSADEKRYRMLKKACEKELLEAADVICCT
CVGAGDPRLARFKFYSILIDESMQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAA
RAGLSQSLFERLVVLGIRPLRLEVQYRMHPQLSKFPSNFFYEGSLQNGVYADERKMKGVD
FPWPQPDKPMFFYACQGQEEIAGSGTSYLNRTEAALVERLTTRFLKCSVKPEQIGIITPY
EGQRAYLVQYMQYNGSLHAKLYQDIEVASVDAFQGREKDLIIMSCVRSNEHQGIGFLNDP
RRLNVALTRARYGIIIVGNPKVLSKQTLWNHLLTFYKENKVLVEGPLNNLKESMIQFSKP
RKLINTINPGTHFMNTAMYDAREAMIPGSVYDRSSHMNGGPAYFNRPHDQISYISPERAQ
SAVANLPVPVGMFLNMAHIPPRFYNQHQQALQARQNQRNRSATRKGGGRQSTNGRNMANG
ASLNLSQTGFNSQASQDLMGGFSQGPLTQGQLSMSQMSQPNYPGLSQPGLSQPELSQDTY
LVDELRSQTEGMLSQDSTYQGDRAYFAASQGGQFSQPY
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgatgcatatggcccaagctctcaaacgttaacttttttggatcctgaagaa
ggaaatgatttattgggtgctgatactcagggttctgatttcgaattcacagatttttct
ttgccatctcaaacgcaagcttctcagattgagcagacgcaaagtcagtcatctagaagc
cagttaaatggaccagatttgtcgttgccaaatggattagacagagatgtttgctcaaca
actcaaagcttaggagaactaacatttcaggaagaggaagaagatcagtattatactaaa
gatttgcctgaacatgcgtgcaaatattgtggaattcatgatccaagttgtgtcgttcaa
tgtaatatttgtaagaggtggttctgtaatggaagaggaaacacatctggaagccatata
ataaatcacttggttagagccaaacataaagaagtaactttgcacaaagatgggcctctt
ggtgaaacagttttggaatgttacagttgtggctgtcggaatgtttttgtgcttggattt
atacctgcaaaagccgattctgttgttgttctcctctgtagacagccttgtgctgctcaa
agcagtttaaaagatatgaattgggatccagatcaatggaaacctttaataagtgatcgt
agctttttggcatggctggttaaagttccccaggagcaggagcaactaagagctcggcaa
gtcacagcccctcaaatcaataaattagaagaattgtggaaggataatgttgatgcatca
tttgaagatttagagaagcctggagttgatgaagaacctcaacaagttctgttaagatat
gaagatggataccaatatcaaaatatatttgggccattggtcaaaatggaggctgattat
gacaaaaagcttaaagaatctcaaactcaagataatattgaagtcagatgggatattggc
ttaaataagaaaattatttcatatttcactattgccaagtctgatacagatatgcgctta
atgcatggagatgaactaaggctgcgttacttgggggaactgcataagccttggtcaggt
gttggccatgtcataaaaattcctgataattatagtgaagaagttggcatcgaaatgaaa
accaatcttggggtaccaactgattgcacctctaactttgttgtggattttgtctggaag
tctacgtcatttgacaggatgcaagctgctctgaggaaatttgccgttgatgagacatca
gtttctgcttacatttatcataaactgttagggcacgaagttgaagatgttttgatgaga
tgtcaattacccaaacatttttctgctcctaacttgcctgaacttaacagatcccaagtg
tatgctgttaaacatgctttgcaaagacctttatctctaattcaaggtcctcctggtaca
gggaaaacagttacttctgctacaattgtttatcatttggttcgacaaagtaatggtcct
gttttggtttgtgctcccagcaatatcgctgttgatcaattgactgagaagattcatcga
actgggttgaaggttgtcagattatgtgccaaaagtcgtgaagccatcaattcaccagtt
tcctttttagcattgcacaatcagattcgcaatttggaagggcattctgaattgcacaaa
ctacaacaactaaaagatgaaactggtgagctttcctctgctgatgagaaaaggtatcga
atgttgaaaaaagcatgtgaaaaggagttattagaggctgctgatgtcatatgttgcaca
tgtgttggtgctggtgatcctcgactagcaagatttaaattttattcaatcttaattgat
gaaagtatgcaagctactgaaccagaatgcatggttcctgttgttttaggtgccaagcaa
ttgatacttgttggagaccattgtcaacttgggccggtagttatgtgtaagaaagctgct
cgagctggactttcccaatccttatttgaaagattagttgttttaggaattcgtcctttg
agattggaagttcagtatcgaatgcatcctcaattaagcaagtttccatccaatttcttt
tatgaaggatctcttcaaaatggtgtttatgcagatgaaaggaaaatgaaaggagttgac
tttccgtggcctcagcccgacaagccaatgtttttttatgcatgccaaggacaagaggaa
attgctggctctggaacttcttatttaaatagaactgaagcagctttggttgaaagactt
actacaaggtttttgaaatgcagtgtcaaacctgagcagattggaataattactccatat
gaaggacaaagagcgtatttagtgcaatatatgcaatataatggatcacttcatgcaaaa
ctctatcaggatatagaagttgccagtgttgatgcctttcaaggacgagaaaaggacttg
attattatgtcctgtgtacgatctaatgaacatcaggggattggatttttgaatgatcct
agacgtttaaatgttgctcttacaagagctagatatggcataataattgttgggaaccct
aaagttttgtccaaacaaacattgtggaatcacttgctgacattttacaaggaaaataaa
gttcttgttgaagggcccttgaataatttaaaggaaagcatgattcaattcagtaaacct
agaaagttgattaataccatcaacccgggcactcacttcatgaatactgctatgtatgat
gctcgtgaagctatgattcctggaagtgtttatgatcgctcttctcacatgaatggaggt
ccagcatactttaatcgacctcacgatcaaatttcttacataagtcccgagagagcacag
agtgcagttgcaaatcttcctgttcctgttggaatgttcttaaatatggctcacatacca
ccaaggttctacaaccaacaccagcaagctttacaagctcgacaaaatcaaagaaatcgt
agtgcaactcgaaaaggaggaggaagacaaagcactaatggtcgtaatatggctaatgga
gcatctttgaatctatcccaaacaggatttaacagtcaagcaagtcaggatttgatgggt
ggtttctcgcaaggtcccctcactcaaggtcagttaagcatgagtcagatgagtcaacct
aattatcctggactatcacaacctggtttgtcacagcctgagctatcacaagacacttat
cttgttgatgaacttcgctctcagacagaagggatgctgtctcaagactccacttatcaa
ggggatagggcttactttgccgcatcccaaggtgggcagttttcgcagccgtattga
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integrated database retrieval system
