Uloborus diversus: 129225202
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Entry
129225202 CDS
T09235
Name
(RefSeq) exosome RNA helicase MTR4-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
udv
Uloborus diversus
Pathway
udv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
udv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129225202
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
udv03019
]
129225202
03041 Spliceosome [BR:
udv03041
]
129225202
03009 Ribosome biogenesis [BR:
udv03009
]
129225202
03016 Transfer RNA biogenesis [BR:
udv03016
]
129225202
Enzymes [BR:
udv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129225202
Messenger RNA biogenesis [BR:
udv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
129225202
Spliceosome [BR:
udv03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
129225202
Complex C
U4/U6.U5 tri-SnRNP related factors
129225202
Ribosome biogenesis [BR:
udv03009
]
Eukaryotic type
Pre-60S particles
Helicases
129225202
Transfer RNA biogenesis [BR:
udv03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
129225202
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
ATPase_2
Motif
Other DBs
NCBI-GeneID:
129225202
NCBI-ProteinID:
XP_054715742
LinkDB
All DBs
Position
6:128832584..128896430
Genome browser
AA seq
1022 aa
AA seq
DB search
MADPEDLFSVFDEQPKKKRRSEPEIKQEKNQKIVDNFLKEIADGKRNCEEEPESEYKKQK
VANILDDINPEEFSSRIQIHTVETVEACLHEVAVPHDSEYVALRQSTSPPSRKYPFILDP
FQKEAILCLENNQSVLVSAHTSAGKTVVAEYAISMSLRDKQRVIYTTPIKALSNQKYREF
YEEFKDVGLLTGDVTINPSASCLIMTTEILRSMLYRGSEVMREVGWVVFDEIHYMRDKER
GVVWEETIILLPDSVHYVFLSATIPNARQFAEWICHLHHQPCHVVYTDYRPVPLQHYIFP
AGGDGLHLVVDENGNFREENFNTAMNVLQVAGGAAKGDSAMRGRKGGMKDGSNCYKLVKM
IMERNFAPVIVFSFSKKECEAYALQMAKLDFNSAEEKPLVEEVFRNAMDVLSDEDKKLPQ
VEHVLPLLKRGIGIHHGGLLPILKETIEILFAEGLIKALFATETFAMGLNMPARTVLFTN
ARKFDGRDFRWVTSGEYIQMSGRAGRRGLDERGIVILMVDEKMSPSAGKDIVKGLPDPIN
SAFHLTYNMVLNLLRVDEINPEYMLERSFFQFQNYSIIPQLCDKIKSLQEEHDSIDIERE
EEVELYYKIQKQLAALSEENRSYIVQPEHCVPFFQPGRLVKVKNGDDDFGWGIIINYQKK
TLSIEHKKDPEVFYVVDVLLEVSRESADTKITSSLKPPPSGEKGIMQVVPIKLNLIQQLS
SVRAYYPEDLRPLDNRMKVLKTIQSIKDRFPDGLPILDPISDMKIKDPGVKEVAKKIEAF
TSRLNHHPLHNNPAAENLLGLYKKKLQIEEQIKEKKAELKKARSLLQMDELKCRKRVLRR
MGYCTASDVIEIKGRVACEVSSADELLLTEMVFNGAFNNLNIHQTTALLSCFVFQEKSNE
MPKLTEELSGPLRLMQDTARRIAKISKESKLDVDTDQYVDMFKPHLMDVVHAWSKGASFA
QVCKMTDVFEGSVIRCMRRLEELMRQMCQAAKAIGNTEMENKFSEGIKLIKRDIVFAASL
YL
NT seq
3069 nt
NT seq
+upstream
nt +downstream
nt
atggctgatcctgaagatttgtttagtgtttttgatgaacaacctaagaaaaaaaggcga
agtgaacctgaaatcaaacaggaaaaaaatcaaaagatagttgataattttttgaaagaa
attgctgatgggaaaaggaactgtgaagaagaacctgaatctgagtataaaaagcaaaaa
gttgcgaacatattggatgacatcaaccctgaagaattttcatctagaatacaaattcat
actgtggaaacagttgaggcctgtcttcatgaggtggctgtcccacacgattcagaatat
gttgctctccgtcaaagcacaagtccgccatcaaggaaatatccatttattttggatccc
tttcagaaagaagccattttatgtttggaaaacaaccaatctgttctcgtgtcagctcac
acttctgctggaaaaactgttgttgcagaatatgccatttctatgtcattaagagataaa
caaagagtaatttatactactccaatcaaagctctgagcaaccaaaaatatcgggagttt
tatgaggagttcaaagatgttggtttgttaactggagatgttaccataaatccatctgct
agttgtttaataatgacaacagaaattttaagaagcatgttatacagaggatctgaagtt
atgagagaagttggctgggttgtttttgatgaaattcattatatgagagataaagaaaga
ggtgtggtatgggaagaaacaatcattttattaccagatagtgtgcattatgtttttctg
tcagctactattcctaatgcaagacagtttgccgagtggatatgtcatcttcatcatcag
ccttgccatgttgtttataccgattaccgacctgtgcctcttcagcattacatttttcct
gctggtggagatggattacatctggttgttgatgaaaatggtaattttcgggaggaaaat
ttcaatactgctatgaatgtattgcaagtagctggcggtgcagctaaaggagactcggca
atgagagggaggaagggaggcatgaaagatggttcgaactgctacaaacttgttaaaatg
ataatggaaagaaattttgctccggtaattgtttttagcttcagcaaaaaagagtgtgaa
gcttatgcactgcaaatggctaaattagatttcaacagtgctgaagaaaaacctcttgta
gaagaagtgttcagaaatgctatggatgtattatcagatgaagataaaaaattgcctcag
gtggaacatgtgttacctcttttaaaacgtggtattggtattcatcatggcggtcttctt
ccaattctaaaagaaacgattgaaattttatttgcagaaggattaattaaagcattgttt
gcaactgaaacttttgctatgggtttaaatatgccagctagaacagttttattcacaaat
gcacgaaaatttgatggcagagattttcgctgggtcacgtcaggggagtatattcaaatg
agtggccgagctggacgaagaggtctcgacgaaagaggcattgttattttaatggttgat
gaaaaaatgagcccttctgctggaaaggacattgtgaagggattaccagatccaataaac
tcagctttccatctgacatacaacatggtgttgaatttgttgagagttgatgaaatcaac
cctgaatatatgcttgagcgttcatttttccaatttcaaaattactccataattcctcag
ctgtgtgacaaaataaaaagtttgcaagaagagcatgatagcatagacattgaaagagaa
gaagaagttgagttgtattacaaaatccaaaaacagctagctgctttatcagaagaaaat
cgttcatatattgtccagccagaacattgtgtgcctttttttcaaccaggtcgtctagtg
aaggtaaagaatggtgatgatgattttggatggggaataataatcaactaccaaaagaag
accctgtctatagaacacaaaaaagatcctgaggttttctacgttgtggatgtcttgtta
gaagtatctcgtgagagtgcggatacaaaaattacttcaagtttaaagccaccaccatct
ggagaaaaaggaataatgcaggttgttccaattaaattaaacctgatacaacaattgagt
tcagtgcgtgcgtattatcctgaagatttaagaccattggataataggatgaaagttttg
aaaactattcagtctatcaaagaccgttttccagatggcctaccaatacttgatcctatt
tcggacatgaagataaaagatcccggtgtaaaagaagttgcaaagaaaattgaagctttt
acatctcgattaaatcatcatcccctccataataatccagcagctgaaaatttgcttgga
ctttataaaaagaaattgcagattgaagaacaaataaaagaaaaaaaggcagagttgaaa
aaagctcgatctctactacaaatggatgagctaaaatgcaggaaaagagttttaaggagg
atgggttattgtactgcatcagatgtcatagagatcaaaggtcgagtagcatgtgaagtt
agtagtgctgatgaactattgctgacagaaatggttttcaatggtgcttttaataatctc
aatatccatcaaactacagccctcttaagctgctttgtttttcaagaaaaatcaaatgaa
atgcctaaattaactgaagagttatctggccctcttcgtttaatgcaggacacagctaga
aggatagctaagatcagtaaagaatcaaagcttgatgtcgatacagatcaatacgttgac
atgtttaaacctcatttaatggatgttgttcatgcatggagcaaaggggcaagctttgcc
caagtttgcaaaatgactgatgtttttgaaggaagtgttattaggtgcatgaggcggcta
gaagaattaatgagacagatgtgtcaagctgctaaagcaataggaaataccgaaatggaa
aataaattttcagaaggtattaagctcattaaaagagatattgtgtttgctgcaagtttg
tatctatga
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