Uloborus diversus: 129225606
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Entry
129225606 CDS
T09235
Name
(RefSeq) PAN2-PAN3 deadenylation complex catalytic subunit PAN2-like
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
udv
Uloborus diversus
Pathway
udv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
udv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129225606
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
udv03019
]
129225606
Enzymes [BR:
udv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
129225606
Messenger RNA biogenesis [BR:
udv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129225606
mRNA degradation factors
3'-5' decay
Pan complex
129225606
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH_1
PAN2_N
RNase_T
UCH
WD40_CDC20-Fz
DNA_pol_A_exo1
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
129225606
NCBI-ProteinID:
XP_054716046
LinkDB
All DBs
Position
1:229064990..229116137
Genome browser
AA seq
1150 aa
AA seq
DB search
MSYHVQDFSALDGGQLESYANGLQLSGYCDGMALGQEYSLLQSILVDGGTHFGVSTVSFD
NFEELLWMGNQGGHLTSYSTAELQKYTSFQVHVSNEVRAIVPHDAGILSLTTNSLRMSAR
RGLPMFSHCSEQVQNMQCMVLTPTGTLLMGGHHKNLIELDLNTVEEINVVQVSGDNCAIL
RKHPRFICSGDISGKVALHDPNTLSVEHIIDCHSGMLSDFDVHGNQLVSCGFSARHGELS
VERFLKVYDLRVMKSMSPIPMMFPPLLLRFVPAYSSRLCVVSQTGQFQMVDTDNSEQYAL
FIHQVETGGADILTFDTSSSCQAFTFGDAAGYLHLYGASNEVQFNQFNRPTEFADSVEPL
PPIDINDEVTPLSTVPAPHCDGKLLSDWPEEFSQVVYRPTPPIDPLILSTMKMVGSIGYA
PNPGNKKRNQVPYQFNQNKPSQDSPVPKDVGPDIVPHRYLKQEIKYSKMGLDEIDFNRYN
RTSFSGLEANLPNSYCNNLIQILYFCEPLRSALLSHLCQREFCLACELGFLFHMLDTAQG
LPCQAANFLRAFRTIPEASAHGLIVNDLNESKKRGNLPTLVQSWTRFMLQQLHTETLEVN
DHLHEENNSENSSIMSQLFGAKLFNCNSCRCRSETCQETTTLLTQLLYPDCRSADKANFQ
YSFMDIVQRSLSVRQHITAWCDNCSRFTSMIQTKFLKSLPDILVLNCGDNKQELEFWKNQ
LNLLTKSSDGSVMQSLPDVPIRRKNCRYGGLCKRVDCRYYHEYRNIDKTQNSSKNSVSWI
PFGLKLKLKGGDVIVTEPDEQEDNVNEENVETAIYELCVVVSVINDLQENGRDNIVTCIK
IGPNAHIRHKGGAAYQWYLFNDFSIIPITANEAVYLNFDWKIPCVLYFSRVDLNNRHNLE
VFNPVEKQVFHDDVSLAARSGQSHMTFTPLTIDEGTAHAGQLVAMDAEFVTLNQEEAEIR
SDGTRSTIRPSQLSVARISCVRGGGPLEGVPFIDDYISTQEQVVDYLTKFSGIQPGDLDA
AISSKHLTTLKATYQKLRFLIDSGVTFVGHGLKNDFRVINLVVPPAQVLDTVYLFQLPNK
RMISLRFLAWHFLDLKIQAETHDSIEDAKTALQLYKKYLELEQSGKTKEALKELYDVGRQ
LQWKVPGIDE
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgtcttatcatgttcaagacttctctgctctggatggtgggcaactagaatcttatgca
aatggacttcaattatcaggttactgtgatggtatggccctgggccaagaatatagtttg
ctccagagtattttggttgatggtggcacacattttggtgtatctacagtatcttttgat
aattttgaagaattgttatggatggggaaccaaggaggtcatttaacttcttattcaact
gctgagttacaaaaatatacatcgttccaagttcatgttagcaatgaagttcgtgcaatt
gttccacatgatgctggtattttgtccctcacaacaaattctcttcgtatgtctgcaaga
agaggacttcctatgtttagccactgctctgaacaagtccagaacatgcagtgcatggtt
ttaaccccaactggtacattgctcatgggtggtcatcacaaaaatcttattgaattggat
ttgaatactgtggaagaaataaacgttgttcaagtgagcggagataactgtgcaatcttg
cgtaaacatcctcgtttcatttgttctggtgatatcagtggaaaagttgccttacatgat
ccaaatactctaagtgttgaacacataatagattgccattctggaatgttatctgatttt
gatgttcatggtaatcaacttgtgagttgtggtttttctgcaaggcatggagagctgtca
gttgaaaggtttctgaaagtttatgacctgcgagtcatgaaaagtatgagtccaataccc
atgatgtttccacctttacttcttcgatttgtaccggcttacagttctcgtctttgtgtt
gtttcacagactggtcagtttcaaatggttgatactgataattctgagcagtatgcttta
ttcattcatcaagttgaaacaggaggtgctgatattctcacttttgatacttcatcttcc
tgtcaagcatttactttcggagatgctgctggttatctgcatttatatggtgctagtaat
gaagttcagtttaatcagtttaacagaccaactgaatttgccgattcagttgaaccactt
cctccaattgatatcaacgatgaggttacacctttatcaacagttccagcccctcattgt
gatggaaagcttttgtcagattggccagaagaattttcgcaagtggtttatagaccaact
ccaccaattgatccattgatcttaagtactatgaaaatggttggttcaattggatatgct
cctaatcctggaaataaaaagcgtaatcaagttccatatcagtttaatcagaacaagcca
tctcaagattcacctgttccaaaagatgttggtcctgatattgttcctcacaggtactta
aaacaagaaattaaatattctaagatgggtttggatgaaatagattttaatcgttacaat
cggacaagtttctccggtttggaagcaaatttgcccaattcttactgcaacaatcttata
cagatactctacttctgtgaacctcttagatctgcacttttaagtcacttgtgtcagcgt
gaattttgtttggcgtgtgaacttggctttctgtttcatatgctagatactgctcaaggc
ttaccttgtcaggcggcaaactttttaagagcttttcgcaccataccagaagcttctgct
cacggtcttattgttaacgatctgaatgaatcaaagaagcggggtaacttgcctactcta
gtgcagagttggactcgttttatgcttcaacagttacatactgaaacattagaagtcaat
gatcatttacatgaagaaaataattcagagaattcttcgatcatgagtcaattgtttgga
gcaaaacttttcaactgtaacagttgccgttgtcgaagtgaaacttgccaagaaacaact
actctcttaactcaactgttatatcctgattgtcgctctgcagataaagcaaacttccag
tattctttcatggatattgttcagcgaagcttatctgtgagacagcacatcacagcatgg
tgcgataattgtagtcgtttcaccagcatgattcaaacaaaatttttgaaatcacttcct
gacattcttgttttgaattgtggtgataataagcaggagctggagttctggaaaaaccaa
ttaaatttgttgactaaatccagtgatggctctgtgatgcaaagtttacctgatgttcct
attagaagaaaaaattgtcgctatggtggattgtgcaagagagttgactgcagatactat
catgaatatcgaaacatagacaagactcaaaattcatcaaaaaattctgtatcatggata
ccatttggtttgaagcttaaattaaaaggaggtgatgtaattgttacagagcctgatgaa
caagaagataatgtaaatgaagaaaatgtggaaacagccatttatgaattatgtgttgtt
gtctctgttataaatgatcttcaagagaatggacgagataacatagttacttgtattaaa
attggtccaaatgctcacattcgccataaaggaggagcagcctatcaatggtatttgttt
aatgacttcagcataattcccattactgcaaatgaagctgtgtacttaaatttcgattgg
aaaattccatgcgtcctttacttttcaagagttgatctgaataatcgacacaatttagaa
gttttcaatcctgtagagaagcaagtgtttcatgatgatgtttcattagcggctagaagt
ggccagtctcacatgactttcactccacttacaattgatgaagggactgctcatgcagga
cagttggttgcaatggatgcagaatttgttacattgaatcaggaggaagctgaaattaga
agtgatggtacaagatcaaccatacgaccctcccagttatctgtagcaagaatttcctgt
gttagagggggtggtcctttagaaggtgtaccttttatagatgattatatatctactcag
gaacaggtagttgattatctgactaagttttctgggattcaacctggagatttagatgca
gccatttcatctaaacatttaacaactttgaaggcaacctaccaaaagttgcgtttctta
attgattctggtgttacatttgttggacatggtttgaaaaatgatttcagagttattaat
ttagtggtaccacctgcacaggttttagatactgtctacctcttccaactacctaataaa
agaatgatttcacttaggtttcttgcttggcattttttagatctgaaaatacaagctgaa
actcatgactcgattgaagatgcaaaaactgccttacaactctacaagaaatatttagag
ttggagcaatctgggaaaacgaaagaggctcttaaagaattatatgatgttggcagacag
ctgcagtggaaagttccagggattgatgaataa
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