Uloborus diversus: 129226808
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Entry
129226808 CDS
T09235
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
udv
Uloborus diversus
Pathway
udv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
udv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129226808
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
udv03019
]
129226808
03041 Spliceosome [BR:
udv03041
]
129226808
Messenger RNA biogenesis [BR:
udv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
129226808
Spliceosome [BR:
udv03041
]
Complex B
Other components
Prp19-related factors
129226808
Complex C
129226808
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_2
TPR_8
ARM_TT21_C
TPR_15
Mad3_BUB1_I
ARM_TT21
DALR_1
PPR
AbiH
Motif
Other DBs
NCBI-GeneID:
129226808
NCBI-ProteinID:
XP_054717410
LinkDB
All DBs
Position
7:complement(98117649..98199892)
Genome browser
AA seq
906 aa
AA seq
DB search
MDLHPTKMHHPSAAAAQSITAQITRSPFSKKSFLPIDESKSEEQVFLILQLIFICIFDFY
LNIKLTFPYIIFKDDEDIPYEEEILRNPYSVKHWLRYIAFKKDAPKAAINLLYERALREL
PGSYTIWHKYLKLRRVQVRGKCVTDPAYEDVNSAFERALVFMHKMPRIWLDYCEFLMNQC
QVTRTRHVFDRALRALPITQHHRIWPLYLTFVSEKAIPETAVRVYRRYLKLCNEDAEDYI
DYLMQIDRLDEAAVKLAEIVNSEQFVSKHGKPKHQLWNELCELISKNPDKVHSLNVDAII
RDGLRRFTDQVGHFWNCLADYYIRSGLFDRARDIYEEAINTVMTVRDFTQVFDAYSQCEE
SLIKAKIEVVEREGSIEEDVLELDLRLAWFDYLLERRPLLLNSVLLRQNPHNVHEWHRRI
TLLEGKPKEIISTYTEAVQKVDPKLACGKLHTLWVSFAKFYESHKQVDDARIIFEKAIQV
PYTNVDDLASVWCEWAEMEIRHEKYDNALKLMLRATALPVNKGDYHDQSIPVQERLYKSL
KVWLLYADLEEVLGTFKSIKAVYDRIIDLRIATPQVIINYGLFLEENNYFEEAFKAYEKG
ISLFKWPNVFDIWNTYLVKFLKRYGGTKLERARDLFEQCLERCPPKFAKSIYLLYAKLEE
EHGLARHAMAVFDRATKAVLPGEKCEMFNIYLKKAAEIYGVTYTRQIYEQAIEALPDNEA
KQMCVKFADLERKLGEIDRARAIYAHCSQMCDPRTHPDFWQTWKEFEIRHGNEDTMREML
RIKRSVQATFNTQVNYMSAQMLGAAVVAAGSATDVPKDSMQELETHAKAMASEAAKDPPT
TMRGTVMFVRGETQGGDRQQAQEITKEKNPDEIDLDFDSDEEQNVEEIQLEEREVPDEVF
GGLKKS
NT seq
2721 nt
NT seq
+upstream
nt +downstream
nt
atggatctacatccaacaaaaatgcatcatccatcagcagctgcagctcaaagcattact
gctcaaatcactcgaagtcctttctcaaaaaagtccttcttgcctatagatgaatcaaag
tccgaggaacaagtatttttaattcttcaattaatatttatatgcatatttgacttctac
ttaaatataaaactaactttcccttatataatttttaaggatgatgaagatataccttac
gaagaagaaattctcagaaacccctattcagtcaagcactggcttcgttacattgctttc
aagaaagatgctcctaaggctgccatcaacctactctatgagcgagcattacgagagttg
cctggaagttatacaatctggcacaaatacttgaaactacgtagagtgcaagtgcgtgga
aaatgcgttactgaccctgcttatgaagatgtgaacagtgcctttgaaagagctttggta
tttatgcataagatgcctcgcatttggcttgattactgtgagtttctgatgaaccagtgc
caagtcacccgaacaagacatgtgtttgatcgagctctgagagctttgcccatcacacaa
caccataggatttggccactttatcttacatttgtttcagaaaaggctattccagaaact
gctgttcgtgtttacaggcgttacttgaagctgtgtaatgaagatgctgaggactacatt
gattatttgatgcaaattgatcggctggatgaagctgctgtgaaattagctgaaattgtg
aacagtgaacaatttgtctccaaacatggaaagccaaaacatcaactctggaatgagttg
tgtgaacttatttctaaaaatcctgacaaagttcactctcttaatgtggatgcaattatt
cgtgatggtctacgccgttttacggatcaagtaggacatttttggaactgtttggccgat
tactacatcagaagtggactttttgatagggcaagagacatatatgaagaagcaattaac
acagtcatgactgtcagagactttactcaggtgtttgatgcctattctcaatgtgaagaa
agtcttattaaggccaaaattgaagttgttgaaagagaaggatctatagaagaagatgtt
cttgaattagatttgaggctggcatggtttgactatttgctagaacgacgacctttactt
ctcaacagtgtcctgctgaggcaaaacccccataatgtccatgaatggcaccgccggatt
acacttctggaaggtaaacccaaagaaatcatcagtacttatacagaagctgtgcaaaaa
gtagaccccaagcttgcttgtgggaaactacatactctatgggtctcttttgccaagttt
tatgaatcacacaagcaagtggatgatgctcgaatcatatttgaaaaagctatacaagta
ccttacactaatgttgatgatttggccagcgtttggtgtgaatgggcagaaatggaaatt
cgccatgaaaaatatgacaacgctttaaaattgatgttaagagcaaccgcattacctgtg
aataaaggagattatcatgaccagtctataccagttcaagagaggttgtataaatcactc
aaagtttggttactttatgccgatttggaagaagtgcttggaacattcaagtcaattaaa
gctgtgtatgaccgaataattgatctgagaattgctactcctcaagtgatcattaattat
ggcttatttttagaggaaaacaactacttcgaagaagctttcaaagcatatgaaaaagga
atttcactctttaaatggcccaatgtattcgacatatggaacacatatttggtgaaattt
ttgaagagatatggcggaacaaaattagaaagagctagagatttgtttgaacagtgcttg
gaacgatgcccaccaaagtttgctaaatcaatttatttattgtatgccaagctggaggaa
gagcacggcttagcccgacatgcaatggcagtctttgatagagcaacaaaagcagtgctg
ccaggagaaaagtgtgagatgtttaacatttacttgaagaaggcggcagaaatctatggt
gtgacgtacacacgacaaatctatgagcaggccatcgaagcacttccagacaatgaggct
aaacagatgtgtgtcaagtttgccgatcttgagcgaaagttgggagaaatagatcgggca
agagcaatctatgcacattgtagtcagatgtgtgatcccaggactcatccagatttttgg
caaacatggaaagaatttgaaattcgtcatggaaatgaagatacaatgagggaaatgctt
agaatcaaaagaagtgtccaagctacttttaatactcaagtcaactacatgtctgcacag
atgcttggggctgctgttgttgcagcaggaagtgcaacagatgtaccaaaagacagtatg
caggagctggaaactcatgcaaaagcaatggcttctgaagctgctaaagacccacccacc
accatgagaggaacagtgatgttcgtcagaggtgaaacacaaggcggtgatcgtcaacag
gcccaagaaataacaaaggaaaagaatccagatgaaatagacttggacttcgatagtgat
gaagagcaaaatgttgaagaaatacaacttgaagaaagggaagtgcctgatgaagtcttt
ggtggactaaaaaaaagctga
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