Uloborus diversus: 129228079
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Entry
129228079 CDS
T09235
Name
(RefSeq) eukaryotic initiation factor 4A-III
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
udv
Uloborus diversus
Pathway
udv03013
Nucleocytoplasmic transport
udv03015
mRNA surveillance pathway
udv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
udv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129228079
09122 Translation
03013 Nucleocytoplasmic transport
129228079
03015 mRNA surveillance pathway
129228079
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
udv03019
]
129228079
03041 Spliceosome [BR:
udv03041
]
129228079
03009 Ribosome biogenesis [BR:
udv03009
]
129228079
03012 Translation factors [BR:
udv03012
]
129228079
Enzymes [BR:
udv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129228079
Messenger RNA biogenesis [BR:
udv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
129228079
mRNA cycle factors
Stress granule specific factors
129228079
Spliceosome [BR:
udv03041
]
Complex C
Other components
EJC/TREX
129228079
Ribosome biogenesis [BR:
udv03009
]
Eukaryotic type
90S particles
Helicases
129228079
Translation factors [BR:
udv03012
]
Eukaryotic type
Initiation factors
eIF-4
129228079
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_19
ResIII
AAA_30
Cas3-like_C_2
UvrD-helicase
AAA_22
Utp25_C
TniB
Motif
Other DBs
NCBI-GeneID:
129228079
NCBI-ProteinID:
XP_054718690
LinkDB
All DBs
Position
8:complement(78731179..78769272)
Genome browser
AA seq
401 aa
AA seq
DB search
MASRVRRVVETDLSNVEFDTSEDVEIIPTFDAIGLREDLLRGIYAYGFERPSAIQQRAIK
PIMKGRDVIAQAQSGTGKTATFAIGVLQMLDTAVRETQVLTLSPTRELAVQIQKVILALG
DYMNVQCHSCIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRRRNLRTRSIKMLVLDEAD
EMLNKGFKDQIYDVYRYLPPATQVILISATLPHEILEMTSKFMTDPIRILVKRDELTLEG
IKQFFVAVEREEWKLDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGD
MPQKERDAIMKEFRSGQTRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGR
FGRKGVAINFVKSDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atggcaagtcgggtgagacgtgtggttgagacagatttatcgaatgttgaattcgatacg
agtgaagatgttgaaatcattcctacatttgatgcgattggtctgcgagaagatttgctt
cgcggtatatatgcctacggatttgaaagaccatcagctattcagcaaagagctattaaa
cctataatgaaaggcagagatgtaattgctcaggcacaatctggtactggaaaaactgca
acatttgcgattggagttcttcaaatgttagacactgcagtacgagagacacaagttttg
acattgtctcctacaagagaattagctgtacagattcaaaaagtcattctggctctaggt
gattatatgaatgtacagtgccattcctgtattggtgggacaaatcttggagaagatata
agaaaattagattatgggcagcatgttgtatcaggcacacctggcagagtttttgatatg
ataagaagaagaaacttgaggacaagatccattaagatgctagttttagatgaagctgat
gaaatgttaaataaaggttttaaagatcaaatctatgatgtttatagatatcttcctcca
gcaactcaagttattttgatatctgctactttgcctcatgaaattttagaaatgaccagt
aaatttatgactgatccaatcaggatcttggtaaaacgtgatgaattgacactggaagga
attaaacagttcttcgttgctgttgaaagagaagaatggaaattggatacattgtgtgat
ttgtatgatacattaactataacacaagccgtaatattttgcaacacaaaaagaaaggta
gactggttgaccgaaaaaatgagggaagctaactttacagtttcatccatgcatggtgac
atgcctcaaaaagaaagagatgctattatgaaggaattccgatctggacaaactcgtgtt
ttaataactacagatgtttgggccagaggcattgatgttcaacaagtttcattagttatt
aactatgatcttccaaataatcgtgagttgtacattcataggattggtcgttctggaaga
tttggacgcaaaggtgttgcaatcaactttgttaaaagtgatgacatcagaatattacgg
gacattgagcagtattattctactcagattgatgaaatgcccatgaatgttgctgacctt
atttaa
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