Candidatus Uabimicrobium helgolandensis: UABHE_000433
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Entry
UABHE_000433 CDS
T10824
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
uhl Candidatus Uabimicrobium helgolandensis
Pathway
uhl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
uhl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
UABHE_000433
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
uhl03021
]
UABHE_000433
03400 DNA repair and recombination proteins [BR:
uhl03400
]
UABHE_000433
Enzymes [BR:
uhl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
UABHE_000433
Transcription machinery [BR:
uhl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
UABHE_000433
DNA repair and recombination proteins [BR:
uhl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
UABHE_000433
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_5
Motif
Other DBs
NCBI-ProteinID:
XEY22722
LinkDB
All DBs
Position
complement(617462..618466)
Genome browser
AA seq
334 aa
AA seq
DB search
MRIRWRDLELPTRVVCVKETLTPVYGEFIVEPFERGFGRSVGNSLRRILLSAIEGCAVAS
VKIKDIDHEFSTIPGVLEDVADIILNVKRIRLSVEDDAIVYIKKSEVGPVTAGDIQSDDE
SLEVHNKDLVIAHITEKLDSDLEIELQVKRGRGYVEASENMKEPQEIGVIPVDSIYSPVQ
HVEYQIENTRVGKMTNYDRLILKITTDGTLAPEMVLVEAAKILRKHLNPFVQYFELGQEL
QEGPQEELISEADENLQKIKEKLLQPIEVLELSVRASNCLAAEGIRTIKDLVKRQETDMM
KIRNFGKTSLKEIKEKLIESSLSLGMQVEEILAS
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atgagaattaggtggcgagatcttgaattacccaccagagtagtctgtgtgaaagaaact
cttacacctgtatatggagaatttatcgtagaaccttttgaaagaggatttggccgcagc
gtaggaaattcattaagacgtatcttattgtctgctattgagggatgtgcagttgcatct
gttaaaatcaaagacattgaccatgagttttccacaattcctggtgtgttagaagatgtt
gcagatattattttaaacgtcaaaagaattcgtttatctgttgaagatgatgcaatcgtt
tacataaagaaaagcgaagtggggcctgtaacagcaggtgacattcaatctgacgatgaa
agcctagaagttcataataaagacttagtaatagctcatattacagaaaaattggactcc
gatctcgaaattgaactccaggtaaaacgaggaagaggttatgttgaagcatcagaaaat
atgaaagaacctcaagaaataggtgtcatacctgttgattctatctattctcctgttcaa
catgtagagtatcaaattgaaaacactcgcgttggaaaaatgaccaattacgaccgactg
attttaaaaattactactgatggaactcttgctcctgagatggttctcgttgaagcagca
aaaatactacgcaaacacttaaatccttttgttcaatactttgaattaggtcaagaactt
caggaaggccctcaagaagaattaatttccgaagccgatgaaaatctacaaaaaataaaa
gaaaagttattgcagcctatcgaagtattagaattgagtgttcgagcgtcaaattgtctt
gcagccgaaggtatacgtactatcaaagatttagtgaaaagacaagaaacggacatgatg
aaaattcgcaattttggaaaaacttcgctaaaagaaataaaagaaaaactaatagagtcc
agcctttcgctaggtatgcaagttgaggaaattttagctagttag
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